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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.6 [Apr-09-2003]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 gi 34809801Chain A, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase Active Site Of Cox-2Length604 (1 .. 604)
Sequence 2 gi 1421375Dioxygenase, Peroxidase Mol_id: 1; Molecule: Prostaglandin H2 Synthase-1; Chain: Null; Synonym: Cyclooxygenase I; Ec:1.14.99.1Length576 (1 .. 576)



2 1

NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database

Score =  745 bits (1924), Expect = 0.0
Identities = 343/560 (61%), Positives = 433/560 (77%), Gaps = 1/560 (0%)





Query: 13  GLSQAANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPN 72
           G     NPCC  PCQ++G C+  G D+Y+CDCTRTG+ G NCT PE  T ++  L+P+P+
Sbjct: 4   GAPAPVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPS 63

Query: 73  TVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLS 132
            +H++LTH + +W+ VN   F+R  +M+ VLT RS LI SPPTYN+ + Y SWE+FSN+S
Sbjct: 64  FIHFLLTHGRWLWDFVN-ATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVS 122

Query: 133 YYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNXXXXXXXXXXX 192
           YYTR LP V  DCPTPMG KG K+LPD++ +  + LLRR+FIPDPQG+N           
Sbjct: 123 YYTRILPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFT 182

Query: 193 XXXXXXDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTV 252
                   K GPGFT+ LGHGVDL HIYG+ L+RQ++LRLFKDGKLKYQ++ GEVYPP+V
Sbjct: 183 HQFFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSV 242

Query: 253 KDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDE 312
           ++  V M YP  IP   Q AVGQEVFGL+PGLM+YATIWLREHNRVCD+LK EHP WGDE
Sbjct: 243 EEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDE 302

Query: 313 QLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYH 372
           QLFQT+RLILIGETIKIVIE+YVQ LSGY  +LKFDPELLF  QFQY+NRIA EFN LYH
Sbjct: 303 QLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYH 362

Query: 373 WHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQA 432
           WHPL+PD+F +  Q+YS++QFL+N S+L+++G+   V++F+RQ AGR+ GGRN+   +  
Sbjct: 363 WHPLMPDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILH 422

Query: 433 VAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPA 492
           VA   I +SR ++ Q  NEYRKRF +KPYTSF+ELTGEKEMAAEL+ LY DID +E YP 
Sbjct: 423 VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPG 482

Query: 493 LLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQS 552
           LL+EK  P++IFGE+M+E+GAPFSLKGL+GNPICSP+YWK STFGGEVGF ++ TA+++ 
Sbjct: 483 LLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKK 542

Query: 553 LICNNVKGCPFTSFNVQDPQ 572
           L+C N K CP+ SF+V DP+
Sbjct: 543 LVCLNTKTCPYVSFHVPDPR 562
CPU time:     0.03 user secs.	    0.01 sys. secs	    0.04 total secs.

Lambda     K      H
   0.321    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2831
Number of Sequences: 0
Number of extensions: 248
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 604
length of database: 505,901,518
effective HSP length: 134
effective length of query: 470
effective length of database: 505,901,384
effective search space: 237773650480
effective search space used: 237773650480
T: 9
A: 40
X1: 16 ( 7.4 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)