Back to "Biological Language Modeling Seminar Topics"

Reference: www.mshri.on.ca/pawson/research1.html

Back to "Protein protein interactions"

 

FHA Domains

Structure:

The FHA domain forms an 11-stranded b-sandwich that has a short a-helix inserted between b strands 2 and 3 and an alpha-helical region at the extreme C-terminus. The b-strand topology is essentially identical to that of the MH2 domain of Smad proteins, although the a-helical insertions involved in MH2 receptor binding and homo-oligomerization differ extensively. The N- and C-termini are in close proximity to one another since the first and last b strands in the sandwich lie adjacent to one another. The peptide binding site is located on the opposite side of the FHA domain, an arrangement that is consistent with the modular nature of an independent folding unit. The phosphothreonine peptide binds at a site created by the loop regions between b 3/4, b4/5, and b6/7, while regions not involved in creating the structural basis for these loops contain variable insertions and share little homology with one another. The figure presents the first FHA domain of Rad53 in complex with a phosphothreonine containing peptide. In this structure, the primary contact on the peptide occurs at the phosphothreonine and the +4 aspartic acid residue.

Reference: Durocher et al. 2000. Mol. Cell 6 (5):1162-1182.


 

Domain binding and function

The FHA domain, or forkhead associated domain, was originally identified as a conserved region of forkhead transcription factors.  It is 65-100 amino acids long, contains several highly conserved key residues, and is found primarily in eukaryotic nuclear proteins.  FHA domain containing proteins are also found in certain prokaryotes, such as mycoplasma bacteria.  The FHA domain mediates phosphopeptide interactions with proteins phosphorylated by serine/threonine kinases.  The first FHA domain of Rad53 binds to a pTXXD motif with a Kd = 1.6 µM, while other FHA domains also bind to pTXXX peptides.

 

Binding examples

FHA domain proteins

Binding partner 

Rad53 Yeast Ser/Thr Kinase Rad9 (phosphorylated)
Yeast checkpoint control protein
KAPP Ser/Thr Phosphatase pRLK5 (phosphorylated)
Arabidopsis receptor-like Ser/Thr Kinase