Schedule

 

2nd BLM Workshop

May 13th and 14th, 2003

Auditorium 1305 Newell Simon Hall

Carnegie Mellon University, Pittsburgh

 

Goals: Results-driven meeting and detailed planning for the coming 6 months. Preparation for NSF reports, due June 15

 

Tuesday

8:30 am Breakfast

9:00 - 9:10 Welcome [Raj Reddy]

9:10 – 9:30 Overview of NSF Reporting Requirements [Judith Klein-Seetharaman]

9:30 - 10:30 Secondary Structure Prediction Yan Liu, Madhavi Ganapathiraju

10:30 – 11 Coffee Break and Discussion

11 – 12:00 Segmentation of Protein Sequences Deborah Weisser, Betty Cheng

12:00 - 1:00 lunch

1 – 2:00 Tailspike Protein Structure and Folding Jonathan King

2:00 - 2:30 Classification of Gene Expression Fan Li

2:30 – 3 Coffee Break and Discussion

3 – 4:30 Genome signatures, immune system and other sequence n-gram comparisons Suman Bharathi, Rose Hoberman

4:30 – 5 Coffee Break and Discussion

5 – 5:45 Protein-protein interactions Harpreet Dhiman

5:45 – 6:15 Toolkit Viji Manoharan, Danny Lam

6:30 pm Dinner

 

Wednesday

8:30 am Breakfast

9:00 – 9:30 Matlab Bioinformatics Toolkit Lucio Cetto

9:30 - 10:30 Classification of protein families Dror Tobi, Betty Cheng

Discussion 10:30 – 11 Break

11 – 12:00 Protein Dynamics and Folding Basak Isin, AJ Rader

12:00 - 12:30 take lunch from buffet

12:30 – 1:30 Ideas for Future Experiments

Deborah Weisser, Basak Isin, AJ Rader, Dror Tobi, Betty Cheng, Viji Manoharan, Danny Lam, Suman Bharathi, Rose Hoberman, Yan Liu, Madhavi Ganapathiraju, Venkatesh Jitender, Fan Li

1:30 - 3:00 General Discussion, Milestones, Plans for 1st International Conference on Integration of Experimental and Computational Studies of Genes and Proteins in Pittsburgh (with Coffee and Pastries!)

3:00 - 3:15 "Best Idea" Award Ceremony

3:15 Adjourn