Download CORAL with sample data:

• runnable jar
  To run the shell script: ./coral or java -Xmx1G -jar coral.jar to run the jar
• Mac OS app
  Unzip and run coral.app

Check it out on GitHub!

Download the draft here.

Filippova D, Gadani A, Kingsford C. Coral: an integrated suite of visualizations for comparing clusterings. To Appear. BMC Bioinformatics, 2012. pdf
Filippova, D, Gadani, A, Kingsford, C. Coral: an integrated suite of visualizations for comparing clusterings of biological data. Poster at ISMB 2012. pdf

Network clustering:

• CFinder (requires registration)
• Graph Summarization (requires registration)
• Link clustering
• MCODE (Cytoscape)
• MINE (Cytoscape)
• MCL
• NeMo (Cytoscape)
• SPICi

Sequence clustering:

• DNACLUST
• Scimm
• CompostBin
• GraphClust (RNA structure)

Gene expression data clustering:

• Dynamic Tree Cut (R package)