Software
Download CORAL with sample data:
- runnable jar
To run the shell script:./coral
orjava -Xmx1G -jar coral.jar
to run the jar - Mac OS app
Unzip and runcoral.app
Code
Check it out on GitHub!
Manual
Download the draft here.
Publications
Filippova D, Gadani A, Kingsford C. Coral: an integrated suite of visualizations for comparing
clusterings. To Appear. BMC Bioinformatics, 2012.
pdf
Filippova, D, Gadani, A, Kingsford, C. Coral: an integrated suite of visualizations for comparing clusterings of biological data. Poster at ISMB 2012. pdf
Some clustering algorithms
Network clustering:
- CFinder (requires registration)
- Graph Summarization (requires registration)
- Link clustering
- MCODE (Cytoscape)
- MINE (Cytoscape)
- MCL
- NeMo (Cytoscape)
- SPICi
- DNACLUST
- Scimm
- CompostBin
- GraphClust (RNA structure)
- Dynamic Tree Cut (R package)