(Frequently also crosslisted as 18-791, CMU ECE : 42-735, CMU BME)
Instructor |
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| John Galeotti | jgaleott+bmia ATandrew.cmu.edu |
Meets students after Thursday's class |
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TA |
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| None | N/A |
By email or appointment |
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We comply with both the U. Pitt. and CMU calendars. Lectures are Tuesday and Thursday from 3:30-4:45 PM, on zoom and/or in GHC 4102, Carnegie Mellon University.
Shadow Program: Approximately 5 or 6 radiology sessions and maybe one or two pathology sessions, 8:30-9:30 AM weekday mornings (and possibly other times optional for shadowing pathology).
directions, and required UPMC confidentiality agreement. Reports should be emailed to your TA and Galeotti.
CMU students can get the Snyder Machine Vision textbook for free online through CMU's Library.
Need extra disk space? You can use your BOX and Google-Drive storage as if they were local network drives. Having one or two 1 TB virtual network drives may be helpful when working with large datasets on a small laptop.
Key ITK Documentation:
Additional hints and details for final project
If you have no idea what to do, consider one of the common topics in this short list of suggestions.
Note about videos: Lecture videos were recorded in 2012, and you can downlaod the lecture videos from the 2012 schedule here. Be sure to download the videos (right-click the video's link then select either "download" or "save-as") rather than try to watch them in your browser. Please let me know if you notice any problems or video content that should be either fixed or trimmed out if it's not relevant to a general audiance (please reference the 2012 lecture number and the playing time into the video at which the problem occurs).
| Week # | Date | Updated for 2024? | Material | Older Video and .pptx files |
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Week 1 |
T 1/16 |
Y |
Power Point Video (from 2012) |
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R 1/18 |
Y | Lecture 2: Programming background: C++ & Python (slides 1 - 39) WARNING: Quiz on book reading next class! Note: If you have a CMU Andrew account, you can get the book for free online through CMU's Library. (For non-CMU students, the first chapters (ch 1, ch 2) of the text book may be freely accessible by scrolling down on Google's book page.) |
Power Point Video (from 2012) |
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Week 2 |
T 1/23 |
Y | To prepare for the quiz, I suggest focussing on big-picture concepts and major themes, what algorithms/methods are trying to do, what they are good for, and (if the text goes over it) when/how they typically fail. Lecture 3: Math & probability background |
Power Point Video (from 2012) |
R 1/25 |
Y | Lecture 4: ITK background & basic usage |
Power Point Video (from 2012) |
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Week 3 |
T 1/30 |
Y | Lecture 5: Image characterization |
Power Point |
R 2/1 |
Y | Lecture 6: Linear processing |
Power Point Video (from 2012) |
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Week 4 |
T 2/6 |
Y | Lecture 7: ITK registration Assignment #2 is ready now. Please try to do it this week. |
Power Point Video (from 2012) |
R 2/8 |
Y |
Lecture 8: Image relaxation: restoration & feature extraction |
Power Point Video (from 2012) |
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Week 5 |
T 2/13 |
Y | Lecture 9: Segmentation, part 1 |
Power Point |
R 2/15 |
Class cancelled (family medical emergency) |
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Week 6 |
T 2/20 |
Y | Segmentation lecture continued |
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R 2/22 |
Y | Lecture 11: Segmentation, part 3 (active contours)
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Power Point |
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Week 7 |
T 2/27 |
Y |
Lecture 12a: Level set segmentations (Snyder 8.5.2 ) [not required, but recommended: Insight into Images ch 8] Lecture: Parametric transforms (Snyder 11.1-11.6) Lecture: Imaging Modalities Shadow program details still being worked out; expect to discuss in class and schedule sometime in the next 2 weeks. |
Power Point Power Point Imaging Modalities Power Point (contains embedded movies) |
R 2/29 |
Y |
Shadow program starts Monday March 18! Complete your UPMC form today. Be sure to sign up for the Shadow Program THIS WEEK, starting tonight at 8pm (as discussed in lecture): https://signup.com/go/TFJsTjh (I suggest creating an account on signup.com in advance so that you can sign up for stations faster.) Discuss final projects. Assignment #3 is now assigned; due date posted on Canvas . Anyone start HW3 yet? Easy/helpful? Deadline? Issues with web browsers, snap, or PDF? Shadow Program — UPMC Confidentiality Forms must be ink-signed, scanned (or photo), and uploaded as pdf or jpeg to Canvas by the deadline listed on Canvas. Shadow Program starts Monday March 18--show up on your days at 8 am (with ink-signed UPMC form!) until you know where you're going |
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Spring Break |
3/5 - 3/14 |
Y | Spring Break |
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Week 8 |
T 3/19 |
Y |
Lecture 13 Registration in depth (Insight into Images ch 10 + Viola & Wells) |
Power Point |
R 3/21 |
Y | Lecture 14: Shape |
Power Point (shape) |
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Week 9 |
T 3/26 |
Y |
Lecture 15: Summarize Cootes and Taylor ASM (Cootes CVIU 1995). (password protected extra slides) Project feedback should be given by tonight. |
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R 3/28 |
Y |
Note: Currently (still) in the ER with my dad. I expect to be online in time for class, but that could change. I will post of Piazza if class is delayed or cancelled. Lecture 16 Deformable registration (Insight into Images ch 11). |
Power Point |
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Week 10 |
T 4/2 |
Y |
Lecture 17 Mathematical morphology & image matching |
Power Point |
R 4/4 |
Y |
Intro to artificial neural networks. (password required) |
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Week 11 |
T 4/9 |
Y |
WARNING: There is a chance class may be delayed starting. If so, I will announce the delay on piazza as soon as possible. Resume prior lecture on slide 71, then |
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R 4/11 |
Y |
No class today: CMU Spring Carnival |
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Week 12 |
T 4/16 |
Y | Lecture: ITK images & iterators Discuss final projects |
Power Point Video (from 2012) |
R 4/18 |
Y | ZOOM ERROR: Please use this new zoom link: https://cmu.zoom.us/j/97754148426?pwd=b0FiV3J5Wmx4V2FuMnZJbE5YQlFGdz09 Lecture: ITK filters: how to write them (neighborhoods, image boundaries, & numeric traits) Student project presentation slides and videoswill be due 1pm Tuesday morning! Presentation order to be assigned over weekend--email (only hard) conflicts today! |
Power Point (ITK Filters) |
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Week 13 |
T 4/23 |
Student project presentation using pre-recorded videos (see random order email) Important: Your presentation should use this name format: |
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R 4/25 |
Student project presentations (presentation order) & Projects Due; All 6 shadow reprots due May 3rd at noon. |
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Week N/A |
T N/A |
Open Q&A (feel free to suggest questions/topics in advance); Student project working time and professor meetings. Presentations: strong preference among students for pre-recorded zoom Any issues with finishing shadow program? Google Compute Credits were issued for hw and/or project use (for GPU and/or CPU cloud computing). |
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R N/A |
No Lecture: CMU Spring Carnival Student project presentation slides and videos will be due 2 pm Tuesday morning! |
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Week N/A |
T N/A |
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R N/A |