------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1780 1g9g_A) ( 246 1ayx ) 0.3280 0.4199 7.7896 ( 9 41 55) 0 0.3922 0.6312 31 19 ( 1780 1g9g_A) ( 514 1c3d ) 0.3871 0.9212 5.1825 ( 0 53 66) 0 0.3871 0.9222 31 13 ( 1780 1g9g_A) ( 553 1cb8_A) 0.1654 0.1970 8.6888 ( 6 12 15) 0 0.3870 0.7958 31 15 ( 1780 1g9g_A) ( 627 1clc ) 0.4516 0.7769 4.4313 ( 2 72 91) 0 0.4831 0.8215 31 18 ( 1780 1g9g_A) ( 792 1dce_B) 0.3871 0.8562 4.7848 ( 0 53 66) 0 0.4029 0.8562 31 14 ( 1780 1g9g_A) ( 868 1dl2_A) 0.5271 0.5271 5.3481 ( 13 111 136) 1 0.5271 0.5271 31 31 ( 1780 1g9g_A) ( 1581 1fo3_A) 0.4829 0.5342 6.0848 ( 5 85 105) 0 0.5295 0.5674 31 28 ( 1780 1g9g_A) ( 1599 1fp3_A) 0.4791 0.7415 5.8629 ( 8 87 105) 1 0.5091 0.7745 31 19 ( 1780 1g9g_A) ( 1780 1g9g_A) 1.0000 1.0000 0.0000 ( 0 414 465) 0 1.0000 1.0000 31 31 ( 1780 1g9g_A) ( 1788 1gai ) 0.4193 0.7211 4.9373 ( 2 59 78) 0 0.4212 0.7212 31 18 ( 1780 1g9g_A) ( 1998 1gxm_A) 0.2903 0.6424 5.6630 ( 0 27 36) 0 0.3215 0.6660 31 14 ( 1780 1g9g_A) ( 2035 1h12_A) 0.4838 0.7882 3.6246 ( 3 87 105) 0 0.4838 0.7882 31 19 ( 1780 1g9g_A) ( 2085 1h54_A) 0.3871 0.4138 5.5232 ( 0 52 66) 0 0.4096 0.4349 31 29 ( 1780 1g9g_A) ( 2242 1hn0_A) 0.3226 0.4998 5.7154 ( 1 36 45) 0 0.3869 0.5978 31 20 ( 1780 1g9g_A) ( 2346 1hzf_A) 0.3871 0.9212 5.2191 ( 0 52 66) 0 0.3871 0.9221 31 13 ( 1780 1g9g_A) ( 2438 1ia6_A) 0.1935 0.3750 3.4621 ( 0 13 15) 0 0.4823 0.8988 31 16 ( 1780 1g9g_A) ( 2688 1j0m_A) 0.3870 0.7482 6.6016 ( 1 52 66) 0 0.4043 0.7489 31 16 ( 1780 1g9g_A) ( 3407 1kre_A) 0.5163 0.5432 6.0798 ( 15 114 136) 1 0.5163 0.5432 31 29 ( 1780 1g9g_A) ( 3413 1ks8_A) 0.4668 0.6723 5.7525 ( 11 85 105) 0 0.4831 0.8219 31 18 ( 1780 1g9g_A) ( 3460 1kwf_A) 0.3871 0.9229 2.6705 ( 0 55 66) 0 0.3871 0.9229 31 13 ( 1780 1g9g_A) ( 3600 1ld8_B) 0.3871 0.5998 5.2725 ( 0 54 66) 0 0.4019 0.5998 31 20 ( 1780 1g9g_A) ( 3613 1lf6_A) 0.4058 0.5035 5.7146 ( 14 74 91) 0 0.4810 0.7941 31 18 ( 1780 1g9g_A) ( 4101 1n1b_A) 0.2296 0.2587 7.1538 ( 10 26 36) 0 0.2370 0.3844 31 13 ( 1780 1g9g_A) ( 4125 1n4q_B) 0.3871 0.7993 4.8948 ( 0 51 66) 0 0.3871 0.7993 31 15 ( 1780 1g9g_A) ( 4152 1n7o_A) 0.3870 0.7472 6.6380 ( 2 54 66) 0 0.4191 0.8066 31 16 ( 1780 1g9g_A) ( 4195 1nc5_A) 0.4512 0.8157 3.8867 ( 4 75 91) 0 0.5098 0.8786 31 17 ( 1780 1g9g_A) ( 4424 1nxc_A) 0.4809 0.5308 6.0171 ( 7 86 105) 0 0.5397 0.5799 31 28 ( 1780 1g9g_A) ( 5273 1qaz_A) 0.3548 0.7840 6.2291 ( 0 42 55) 0 0.3765 0.7840 31 14 ( 1780 1g9g_A) ( 5710 1rwh_A) 0.4192 0.8608 7.0763 ( 2 63 78) 0 0.4192 0.8608 31 15 ( 1780 1g9g_A) ( 6106 1ut9_A) 0.4828 0.8627 5.1020 ( 5 81 105) 0 0.4828 0.8627 31 17 ( 1780 1g9g_A) ( 6536 2sqc_A) 0.4493 0.8202 6.1596 ( 6 72 91) 0 0.4493 0.8202 31 16 ( 1780 1g9g_A) ( 6537 2sqc_A) 0.1613 0.3843 9.7747 ( 0 8 10) 0 0.3226 0.7684 31 13 ( 1780 1g9g_A) ( 6622 5eau ) 0.2527 0.4656 6.4175 ( 4 19 28) 0 0.2875 0.6233 31 9 -------------------------------------------------------------------------------------------------------------------------