------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1998 1gxm_A) ( 246 1ayx ) 0.5710 0.4210 6.4564 ( 0 23 28) 0 0.6411 0.4733 14 19 ( 1998 1gxm_A) ( 514 1c3d ) 0.5713 0.6152 4.9836 ( 0 24 28) 0 0.5713 0.6152 14 13 ( 1998 1gxm_A) ( 553 1cb8_A) 0.7079 0.6621 6.0241 ( 2 34 45) 0 0.7079 0.6621 14 15 ( 1998 1gxm_A) ( 627 1clc ) 0.5713 0.4444 5.0702 ( 0 23 28) 0 0.6927 0.5491 14 18 ( 1998 1gxm_A) ( 792 1dce_B) 0.5713 0.5713 5.1188 ( 0 24 28) 0 0.5713 0.5713 14 14 ( 1998 1gxm_A) ( 868 1dl2_A) 0.6425 0.2903 5.4614 ( 0 27 36) 0 0.7771 0.3547 14 31 ( 1998 1gxm_A) ( 1581 1fo3_A) 0.5710 0.2857 3.5820 ( 1 25 28) 0 0.7411 0.3913 14 28 ( 1998 1gxm_A) ( 1599 1fp3_A) 0.5713 0.4210 4.8373 ( 0 22 28) 0 0.6424 0.4736 14 19 ( 1998 1gxm_A) ( 1780 1g9g_A) 0.6424 0.2903 5.6630 ( 0 27 36) 0 0.6660 0.3215 14 31 ( 1998 1gxm_A) ( 1788 1gai ) 0.5712 0.4444 5.6621 ( 0 22 28) 0 0.5712 0.4478 14 18 ( 1998 1gxm_A) ( 1998 1gxm_A) 1.0000 1.0000 0.0000 ( 0 79 91) 0 1.0000 1.0000 14 14 ( 1998 1gxm_A) ( 2035 1h12_A) 0.5712 0.4210 5.5188 ( 0 23 28) 0 0.7091 0.5252 14 19 ( 1998 1gxm_A) ( 2085 1h54_A) 0.6415 0.3103 6.6519 ( 1 27 36) 0 0.6423 0.3342 14 29 ( 1998 1gxm_A) ( 2242 1hn0_A) 0.6425 0.4499 5.4248 ( 0 27 36) 0 0.6425 0.4499 14 20 ( 1998 1gxm_A) ( 2346 1hzf_A) 0.5712 0.6151 5.2923 ( 0 23 28) 0 0.5712 0.6151 14 13 ( 1998 1gxm_A) ( 2438 1ia6_A) 0.6417 0.5619 7.2386 ( 0 30 36) 0 0.7096 0.6226 14 16 ( 1998 1gxm_A) ( 2688 1j0m_A) 0.6419 0.5620 5.6369 ( 1 27 36) 0 0.6419 0.5620 14 16 ( 1998 1gxm_A) ( 3407 1kre_A) 0.6421 0.3103 5.4802 ( 1 30 36) 0 0.7094 0.3666 14 29 ( 1998 1gxm_A) ( 3413 1ks8_A) 0.5712 0.4444 5.3712 ( 0 23 28) 0 0.6424 0.4999 14 18 ( 1998 1gxm_A) ( 3460 1kwf_A) 0.5713 0.6151 5.2079 ( 0 22 28) 0 0.6418 0.6908 14 13 ( 1998 1gxm_A) ( 3600 1ld8_B) 0.5713 0.4000 4.6295 ( 0 23 28) 0 0.6370 0.4490 14 20 ( 1998 1gxm_A) ( 3613 1lf6_A) 0.5769 0.4779 5.3913 ( 4 30 36) 0 0.6421 0.4998 14 18 ( 1998 1gxm_A) ( 4101 1n1b_A) 0.5710 0.6148 6.5430 ( 0 21 28) 0 0.5710 0.6148 14 13 ( 1998 1gxm_A) ( 4125 1n4q_B) 0.5713 0.5332 4.7931 ( 0 21 28) 0 0.5713 0.5332 14 15 ( 1998 1gxm_A) ( 4152 1n7o_A) 0.6425 0.5623 5.5567 ( 0 28 36) 0 0.6425 0.5623 14 16 ( 1998 1gxm_A) ( 4195 1nc5_A) 0.6424 0.5292 5.7284 ( 0 29 36) 0 0.6424 0.5292 14 17 ( 1998 1gxm_A) ( 4424 1nxc_A) 0.6424 0.3214 5.7581 ( 0 29 36) 0 0.7408 0.3912 14 28 ( 1998 1gxm_A) ( 5273 1qaz_A) 0.5711 0.5711 5.9302 ( 0 25 28) 0 0.7054 0.7054 14 14 ( 1998 1gxm_A) ( 5710 1rwh_A) 0.6419 0.5993 5.6144 ( 1 27 36) 0 0.6419 0.5993 14 15 ( 1998 1gxm_A) ( 6106 1ut9_A) 0.5713 0.4705 5.0556 ( 0 23 28) 0 0.5713 0.4931 14 17 ( 1998 1gxm_A) ( 6536 2sqc_A) 0.5713 0.4999 4.8622 ( 0 24 28) 0 0.5713 0.5205 14 16 ( 1998 1gxm_A) ( 6537 2sqc_A) 0.2972 0.3071 6.0549 ( 2 7 10) 0 0.5713 0.6152 14 13 ( 1998 1gxm_A) ( 6622 5eau ) 0.5708 0.8829 7.3277 ( 0 22 28) 0 0.5708 0.8829 14 9 -------------------------------------------------------------------------------------------------------------------------