------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [2438, 246]: Comparing 1ia6_A and 1ayx, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 29 (19 H + 10 S) secondary structure elements in 1ayx, of which 19 satisfy the size requirements. 1.33586 [ 1.58484] ((1 . 1) (3 . 3) (5 . 4) (10 . 7) (11 . 8) (12 . 12) (13 . 13) (15 . 17) (16 . 18) (17 . 20) (18 . 26) (21 . 29)) 6.296 {0/52:66} B:0 1.45600 [ 1.72814] ((1 . 1) (3 . 3) (5 . 4) (10 . 7) (11 . 8) (12 . 12) (13 . 13) (16 . 18) (17 . 20) (18 . 26) (21 . 29)) 5.857 {0/45:55} B:0 1.45600 [ 1.72814] ((1 . 1) (3 . 3) (5 . 4) (10 . 7) (11 . 9) (12 . 12) (13 . 13) (15 . 17) (17 . 20) (18 . 26) (21 . 29)) 5.860 {0/43:55} B:0 2.66715 [ 3.16696] ((3 . 3) (5 . 4) (10 . 7) (11 . 8) (17 . 17) (18 . 18)) 7.012 {0/9:15} B:0 3.20025 [ 3.80015] ((5 . 1) (10 . 3) (16 . 9) (17 . 12) (18 . 13)) 6.779 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.7489 [and 1/min{score2}: 0.6311] [2438, 514]: Comparing 1ia6_A and 1c3d, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 13 (13 H + 0 S) secondary structure elements in 1c3d, of which 13 satisfy the size requirements. 1.33422 [ 1.08498] ((1 . 1) (3 . 2) (5 . 3) (10 . 4) (11 . 5) (12 . 7) (13 . 8) (15 . 9) (16 . 10) (17 . 11) (18 . 12) (21 . 13)) 4.839 {0/57:66} B:0 2.66677 [ 2.16685] ((11 . 1) (12 . 2) (13 . 3) (15 . 4) (16 . 5) (21 . 11)) 4.723 {0/13:15} B:0 2.66685 [ 2.16702] ((13 . 1) (15 . 2) (16 . 3) (17 . 4) (18 . 5) (21 . 9)) 5.526 {0/13:15} B:0 2.66764 [ 2.16848] ((1 . 3) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (15 . 13)) 8.342 {0/11:15} B:0 3.20006 [ 2.60011] ((3 . 4) (5 . 5) (12 . 11) (13 . 12) (15 . 13)) 4.714 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.7497 [and 1/min{score2}: 0.9222] [2438, 553]: Comparing 1ia6_A and 1cb8_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 57 (22 H + 35 S) secondary structure elements in 1cb8_A, of which 15 satisfy the size requirements. 1.45674 [ 1.36629] ((1 . 2) (3 . 3) (5 . 4) (10 . 6) (11 . 7) (12 . 9) (13 . 10) (15 . 14) (16 . 15) (17 . 21) (18 . 22)) 6.487 {0/42:55} B:0 2.36147 [ 2.31709] ((1 . 2) (3 . 3) (5 . 6) (10 . 9) (11 . 10) (12 . 14) (13 . 15) (15 . 21) (16 . 22)) 6.321 {6/28:36} B:0 2.66714 [ 2.50058] ((11 . 2) (12 . 3) (13 . 4) (15 . 5) (17 . 9) (18 . 10)) 6.970 {0/12:15} B:0 3.20004 [ 3.00005] ((9 . 12) (10 . 14) (11 . 15) (12 . 21) (13 . 22)) 4.234 {0/5:10} B:0 3.20008 [ 3.00009] ((1 . 2) (10 . 9) (11 . 10) (12 . 14) (13 . 15)) 5.087 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7456 [and 1/min{score2}: 0.7940] [2438, 627]: Comparing 1ia6_A and 1clc, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 31 (16 H + 15 S) secondary structure elements in 1clc, of which 18 satisfy the size requirements. 1.06971 [ 1.20214] ((1 . 11) (3 . 15) (4 . 16) (5 . 18) (6 . 19) (9 . 21) (10 . 22) (11 . 23) (12 . 24) (13 . 25) (15 . 26) (16 . 27) (17 . 28) (18 . 29) (21 . 31)) 2.598 {3/87:105} B:0 3.20012 [ 3.60009] ((5 . 11) (10 . 15) (11 . 18) (15 . 22) (21 . 28)) 5.695 {0/7:10} B:0 3.20022 [ 3.60015] ((1 . 18) (10 . 26) (11 . 27) (12 . 28) (13 . 29)) 6.559 {0/7:10} B:0 3.20031 [ 3.60022] ((1 . 18) (10 . 26) (11 . 27) (12 . 28) (17 . 31)) 7.177 {0/8:10} B:0 3.37262 [ 3.72477] ((4 . 11) (15 . 22) (16 . 23) (17 . 24) (18 . 25)) 9.722 {2/9:10} B:0 SIMILARITY (1/min{score1}): 0.9348 [and 1/min{score2}: 0.8318] [2438, 792]: Comparing 1ia6_A and 1dce_B, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 21 (19 H + 2 S) secondary structure elements in 1dce_B, of which 14 satisfy the size requirements. 2.66680 [ 2.33354] ((13 . 1) (15 . 3) (16 . 5) (17 . 8) (18 . 10) (21 . 14)) 5.098 {0/14:15} B:0 2.66682 [ 2.33356] ((11 . 1) (12 . 3) (13 . 5) (17 . 11) (18 . 13) (21 . 17)) 5.251 {0/14:15} B:0 2.66692 [ 2.33372] ((3 . 3) (11 . 13) (12 . 14) (15 . 17) (16 . 19) (17 . 20)) 5.978 {0/13:15} B:0 3.20010 [ 2.80015] ((12 . 8) (13 . 10) (17 . 14) (18 . 16) (21 . 20)) 5.385 {0/9:10} B:0 3.20032 [ 2.80048] ((5 . 1) (12 . 11) (13 . 13) (17 . 17) (18 . 19)) 7.245 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.8108 [and 1/min{score2}: 0.9253] [2438, 868]: Comparing 1ia6_A and 1dl2_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 41 (22 H + 19 S) secondary structure elements in 1dl2_A, of which 31 satisfy the size requirements. 1.81673 [ 2.68883] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 15) (13 . 16) (15 . 20) (16 . 25) (17 . 32) (18 . 33) (21 . 38)) 5.771 {9/54:66} B:0 1.89438 [ 2.71400] ((1 . 4) (3 . 7) (5 . 9) (10 . 15) (11 . 16) (12 . 20) (13 . 21) (15 . 25) (16 . 27) (17 . 32) (18 . 33) (21 . 38)) 6.021 {9/51:66} B:0 3.42011 [ 3.65365] ((1 . 4) (3 . 7) (5 . 8) (10 . 15) (11 . 16) (12 . 20) (13 . 21) (15 . 25) (16 . 27) (17 . 32) (18 . 33) (21 . 38)) 6.577 {17/50:66} B:0 4.07640 [ 4.18302] ((1 . 4) (3 . 7) (5 . 8) (9 . 10) (10 . 15) (11 . 16) (12 . 20) (13 . 21) (15 . 25) (16 . 27) (17 . 32) (18 . 33) (21 . 38)) 6.679 {24/59:78} B:0 1.16066 [ 2.21679] ((1 . 16) (3 . 20) (5 . 21) (6 . 23) (9 . 24) (10 . 25) (11 . 27) (12 . 32) (13 . 33) (15 . 38) (16 . 5) (17 . 8) (18 . 9) (21 . 15)) 5.462 {4/72:91} B:1 SIMILARITY (1/min{score1}): 0.8616 [and 1/min{score2}: 0.4511] [2438, 1581]: Comparing 1ia6_A and 1fo3_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 35 (17 H + 18 S) secondary structure elements in 1fo3_A, of which 28 satisfy the size requirements. 1.33514 [ 2.33367] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 14) (13 . 15) (15 . 19) (16 . 20) (17 . 31) (18 . 32) (21 . 33)) 5.692 {1/54:66} B:0 1.62956 [ 2.26411] ((1 . 4) (3 . 7) (5 . 9) (6 . 10) (10 . 14) (11 . 15) (12 . 19) (13 . 20) (15 . 26) (16 . 27) (17 . 31) (18 . 32) (21 . 33)) 5.891 {9/61:78} B:0 1.74315 [ 2.44462] ((1 . 4) (3 . 7) (5 . 9) (10 . 13) (11 . 15) (12 . 19) (13 . 20) (15 . 26) (16 . 27) (17 . 31) (18 . 32) (21 . 33)) 5.845 {8/51:66} B:0 1.86719 [ 2.49316] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 14) (13 . 19) (15 . 26) (16 . 27) (17 . 31) (18 . 32) (21 . 33)) 6.096 {9/52:66} B:0 2.05913 [ 2.58220] ((1 . 1) (3 . 4) (5 . 8) (10 . 13) (11 . 15) (12 . 19) (13 . 20) (15 . 26) (16 . 27) (17 . 31) (18 . 32) (21 . 33)) 6.952 {10/51:66} B:0 SIMILARITY (1/min{score1}): 0.8619 [and 1/min{score2}: 0.4992] [2438, 1599]: Comparing 1ia6_A and 1fp3_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 29 (17 H + 12 S) secondary structure elements in 1fp3_A, of which 19 satisfy the size requirements. 1.33517 [ 1.58443] ((1 . 1) (3 . 3) (5 . 5) (10 . 8) (11 . 9) (12 . 12) (13 . 14) (15 . 20) (16 . 21) (17 . 25) (18 . 26) (21 . 29)) 5.818 {0/56:66} B:0 1.33595 [ 1.58490] ((1 . 1) (3 . 3) (5 . 5) (10 . 8) (11 . 9) (12 . 12) (13 . 13) (15 . 20) (16 . 21) (17 . 25) (18 . 26) (21 . 29)) 6.353 {0/54:66} B:0 2.66677 [ 3.16673] ((5 . 1) (10 . 3) (11 . 5) (12 . 8) (13 . 9) (21 . 25)) 4.760 {0/12:15} B:0 3.20010 [ 3.80006] ((10 . 12) (11 . 13) (16 . 21) (17 . 25) (18 . 26)) 5.432 {0/8:10} B:0 3.20011 [ 3.80007] ((11 . 1) (15 . 3) (16 . 5) (17 . 8) (18 . 9)) 5.593 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8106 [and 1/min{score2}: 0.7062] [2438, 1780]: Comparing 1ia6_A and 1g9g_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 50 (25 H + 25 S) secondary structure elements in 1g9g_A, of which 31 satisfy the size requirements. 2.66670 [ 5.16667] ((1 . 29) (3 . 33) (5 . 34) (6 . 36) (10 . 38) (11 . 39)) 3.462 {0/13:15} B:0 2.66678 [ 5.16668] ((1 . 29) (3 . 33) (6 . 36) (10 . 38) (11 . 39) (15 . 50)) 4.880 {0/11:15} B:0 3.20009 [ 6.20001] ((1 . 19) (5 . 29) (6 . 30) (15 . 38) (16 . 39)) 5.221 {0/9:10} B:0 3.20009 [ 6.20001] ((1 . 29) (3 . 33) (6 . 36) (9 . 37) (15 . 50)) 5.242 {0/7:10} B:0 3.20013 [ 6.20002] ((3 . 18) (5 . 19) (10 . 27) (11 . 29) (15 . 33)) 5.816 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8988 [and 1/min{score2}: 0.4823] [2438, 1788]: Comparing 1ia6_A and 1gai, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 27 (18 H + 9 S) secondary structure elements in 1gai, of which 18 satisfy the size requirements. 1.33508 [ 1.50123] ((1 . 1) (3 . 3) (5 . 4) (10 . 7) (11 . 9) (12 . 12) (13 . 13) (15 . 15) (16 . 16) (17 . 19) (18 . 23) (21 . 26)) 5.743 {0/53:66} B:0 3.20007 [ 3.60005] ((1 . 15) (5 . 19) (6 . 20) (9 . 22) (10 . 23)) 4.942 {0/8:10} B:0 3.20023 [ 3.60016] ((10 . 3) (11 . 4) (16 . 9) (17 . 12) (18 . 13)) 6.688 {0/8:10} B:0 3.20035 [ 3.60024] ((3 . 15) (5 . 16) (10 . 19) (11 . 21) (15 . 26)) 7.387 {0/7:10} B:0 3.20073 [ 3.60051] ((10 . 3) (11 . 4) (17 . 12) (18 . 13) (21 . 19)) 8.887 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8099 [and 1/min{score2}: 0.7208] [2438, 1998]: Comparing 1ia6_A and 1gxm_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 28 (14 H + 14 S) secondary structure elements in 1gxm_A, of which 14 satisfy the size requirements. 1.77964 [ 1.55833] ((4 . 1) (5 . 2) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 16) (16 . 17) (17 . 28)) 7.239 {0/30:36} B:0 2.00034 [ 1.75050] ((11 . 2) (12 . 5) (13 . 6) (15 . 10) (16 . 11) (17 . 16) (18 . 17) (21 . 28)) 5.160 {0/24:28} B:0 2.00036 [ 1.75054] ((1 . 2) (3 . 5) (5 . 6) (10 . 10) (11 . 11) (12 . 16) (13 . 17) (15 . 28)) 5.254 {0/23:28} B:0 2.00065 [ 1.75097] ((5 . 2) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 16) (16 . 17) (17 . 28)) 6.071 {0/22:28} B:0 2.25847 [ 2.16287] ((3 . 1) (5 . 2) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 16) (16 . 17) (17 . 28)) 6.569 {6/30:36} B:0 SIMILARITY (1/min{score1}): 0.6226 [and 1/min{score2}: 0.7096] [2438, 2035]: Comparing 1ia6_A and 1h12_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 26 (16 H + 10 S) secondary structure elements in 1h12_A, of which 19 satisfy the size requirements. 1.15912 [ 1.36695] ((1 . 3) (3 . 7) (5 . 8) (6 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 17) (13 . 18) (15 . 20) (16 . 21) (17 . 24) (18 . 25) (21 . 26)) 5.483 {4/74:91} B:0 3.20010 [ 3.80006] ((1 . 3) (10 . 17) (16 . 21) (17 . 24) (18 . 25)) 5.424 {0/10:10} B:0 3.20014 [ 3.80009] ((4 . 3) (12 . 12) (13 . 13) (15 . 17) (16 . 18)) 5.916 {0/8:10} B:0 3.20021 [ 3.80012] ((10 . 12) (11 . 13) (17 . 20) (18 . 21) (21 . 26)) 6.493 {0/8:10} B:0 3.46378 [ 3.96678] ((3 . 7) (5 . 8) (6 . 10) (9 . 11) (10 . 13)) 6.405 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.8627 [and 1/min{score2}: 0.7316] [2438, 2085]: Comparing 1ia6_A and 1h54_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 58 (24 H + 34 S) secondary structure elements in 1h54_A, of which 29 satisfy the size requirements. 1.33501 [ 2.41695] ((1 . 27) (3 . 28) (5 . 29) (10 . 32) (11 . 33) (12 . 36) (13 . 38) (15 . 46) (16 . 47) (17 . 48) (18 . 49) (21 . 51)) 5.687 {0/53:66} B:0 1.45519 [ 2.63647] ((1 . 27) (3 . 28) (5 . 29) (10 . 32) (11 . 33) (12 . 36) (15 . 46) (16 . 47) (17 . 48) (18 . 49) (21 . 51)) 4.767 {0/44:55} B:0 2.66706 [ 4.83340] ((5 . 29) (10 . 32) (11 . 33) (12 . 36) (18 . 47) (21 . 51)) 6.666 {0/13:15} B:0 3.20016 [ 5.80003] ((10 . 36) (15 . 46) (16 . 47) (17 . 48) (18 . 49)) 6.051 {0/8:10} B:0 3.20018 [ 5.80003] ((3 . 30) (5 . 32) (10 . 33) (11 . 36) (12 . 38)) 6.293 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8110 [and 1/min{score2}: 0.4482] [2438, 2242]: Comparing 1ia6_A and 1hn0_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 80 (28 H + 52 S) secondary structure elements in 1hn0_A, of which 20 satisfy the size requirements. 2.28598 [ 2.85728] ((5 . 15) (10 . 23) (11 . 24) (12 . 26) (13 . 28) (15 . 31) (16 . 32)) 5.392 {0/17:21} B:0 2.66679 [ 3.33340] ((12 . 23) (13 . 24) (15 . 26) (16 . 28) (17 . 31) (18 . 32)) 4.983 {0/10:15} B:0 2.66869 [ 3.33437] ((11 . 19) (12 . 23) (13 . 24) (15 . 26) (16 . 28) (18 . 32)) 10.019 {0/11:15} B:0 3.20033 [ 4.00017] ((5 . 19) (15 . 31) (16 . 32) (17 . 36) (18 . 37)) 7.314 {0/7:10} B:0 3.20035 [ 4.00018] ((15 . 23) (16 . 24) (17 . 26) (18 . 28) (21 . 36)) 7.415 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7446 [and 1/min{score2}: 0.5982] [2438, 2346]: Comparing 1ia6_A and 1hzf_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 15 (13 H + 2 S) secondary structure elements in 1hzf_A, of which 13 satisfy the size requirements. 1.33436 [ 1.08524] ((1 . 1) (3 . 2) (5 . 3) (10 . 4) (11 . 5) (12 . 7) (13 . 8) (15 . 9) (16 . 10) (17 . 13) (18 . 14) (21 . 15)) 5.024 {0/57:66} B:0 2.66677 [ 2.16686] ((11 . 1) (12 . 2) (13 . 3) (15 . 4) (16 . 5) (21 . 13)) 4.738 {0/12:15} B:0 2.66687 [ 2.16705] ((13 . 1) (15 . 2) (16 . 3) (17 . 4) (18 . 5) (21 . 9)) 5.666 {0/12:15} B:0 2.66696 [ 2.16721] ((5 . 1) (15 . 7) (16 . 8) (17 . 9) (18 . 10) (21 . 15)) 6.164 {0/14:15} B:0 2.66733 [ 2.16790] ((1 . 3) (10 . 9) (11 . 10) (12 . 13) (13 . 14) (15 . 15)) 7.568 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.9225] [2438, 2438]: Comparing 1ia6_A and 1ia6_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (21 . 21)) 0.000 {0/108:120} B:0 3.20027 [ 3.20027] ((5 . 1) (15 . 10) (16 . 11) (17 . 12) (18 . 13)) 6.925 {0/7:10} B:0 3.20027 [ 3.20027] ((1 . 5) (10 . 15) (11 . 16) (12 . 17) (13 . 18)) 6.925 {0/7:10} B:0 3.20030 [ 3.20030] ((5 . 1) (15 . 10) (16 . 11) (17 . 12) (21 . 17)) 7.137 {0/8:10} B:0 3.20030 [ 3.20030] ((1 . 5) (10 . 15) (11 . 16) (12 . 17) (17 . 21)) 7.137 {0/8:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [2438, 2688]: Comparing 1ia6_A and 1j0m_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 58 (23 H + 35 S) secondary structure elements in 1j0m_A, of which 16 satisfy the size requirements. 1.33570 [ 1.33570] ((1 . 2) (3 . 4) (5 . 5) (10 . 7) (11 . 8) (12 . 9) (13 . 10) (15 . 14) (16 . 15) (17 . 21) (18 . 22) (21 . 24)) 6.194 {0/55:66} B:0 2.28607 [ 2.28607] ((12 . 4) (13 . 5) (15 . 7) (16 . 8) (17 . 9) (18 . 10) (21 . 21)) 5.788 {0/15:21} B:0 2.66700 [ 2.66700] ((1 . 5) (5 . 10) (10 . 14) (11 . 15) (12 . 21) (13 . 22)) 6.362 {0/11:15} B:0 2.66713 [ 2.66713] ((12 . 4) (13 . 5) (15 . 6) (16 . 8) (17 . 9) (18 . 10)) 6.917 {0/11:15} B:0 3.20012 [ 3.20012] ((1 . 2) (10 . 9) (11 . 10) (12 . 14) (13 . 15)) 5.718 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8115 [and 1/min{score2}: 0.8115] [2438, 3407]: Comparing 1ia6_A and 1kre_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 36 (20 H + 16 S) secondary structure elements in 1kre_A, of which 29 satisfy the size requirements. 1.33486 [ 2.41692] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 14) (13 . 15) (15 . 18) (16 . 19) (17 . 25) (18 . 26) (21 . 34)) 5.555 {0/55:66} B:0 1.33510 [ 2.41696] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 14) (13 . 15) (15 . 18) (16 . 19) (17 . 31) (18 . 32) (21 . 34)) 5.756 {0/53:66} B:0 1.74294 [ 2.51764] ((1 . 1) (3 . 4) (5 . 5) (10 . 8) (11 . 9) (12 . 14) (13 . 15) (15 . 18) (16 . 25) (17 . 31) (18 . 32) (21 . 34)) 5.445 {8/51:66} B:0 1.84581 [ 2.41610] ((1 . 4) (3 . 7) (5 . 9) (6 . 10) (10 . 14) (11 . 15) (12 . 18) (13 . 19) (15 . 25) (16 . 26) (17 . 31) (18 . 32) (21 . 34)) 5.942 {11/63:78} B:0 1.86710 [ 2.56225] ((1 . 4) (3 . 7) (5 . 9) (10 . 14) (11 . 15) (12 . 18) (13 . 19) (15 . 25) (16 . 26) (17 . 31) (18 . 32) (21 . 34)) 5.928 {9/52:66} B:0 SIMILARITY (1/min{score1}): 0.8214 [and 1/min{score2}: 0.4796] [2438, 3413]: Comparing 1ia6_A and 1ks8_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 24 (21 H + 3 S) secondary structure elements in 1ks8_A, of which 18 satisfy the size requirements. 1.00545 [ 1.12884] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 14) (13 . 15) (15 . 17) (16 . 18) (17 . 19) (18 . 20) (21 . 24)) 1.502 {4/104:120} B:0 1.06881 [ 1.20150] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 10) (11 . 11) (12 . 14) (13 . 15) (15 . 17) (16 . 18) (17 . 19) (18 . 20) (21 . 24)) 1.288 {3/94:105} B:0 1.54254 [ 1.60816] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (9 . 6) (10 . 10) (11 . 11) (12 . 14) (13 . 15) (15 . 17) (16 . 18) (17 . 19) (18 . 20) (21 . 24)) 2.196 {11/78:91} B:0 3.20010 [ 3.60007] ((5 . 1) (10 . 3) (11 . 5) (15 . 10) (21 . 19)) 5.452 {0/7:10} B:0 3.20019 [ 3.60014] ((1 . 1) (11 . 13) (17 . 19) (18 . 20) (21 . 24)) 6.385 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.9946 [and 1/min{score2}: 0.8859] [2438, 3460]: Comparing 1ia6_A and 1kwf_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 20 (16 H + 4 S) secondary structure elements in 1kwf_A, of which 13 satisfy the size requirements. 1.33428 [ 1.08509] ((1 . 1) (3 . 6) (5 . 7) (10 . 9) (11 . 10) (12 . 12) (13 . 13) (15 . 14) (16 . 15) (17 . 17) (18 . 18) (21 . 20)) 4.922 {0/54:66} B:0 2.66674 [ 2.16681] ((5 . 1) (12 . 9) (13 . 10) (15 . 12) (16 . 13) (21 . 20)) 4.407 {0/12:15} B:0 2.66690 [ 2.16711] ((1 . 7) (10 . 14) (11 . 15) (12 . 17) (13 . 18) (15 . 20)) 5.858 {0/10:15} B:0 3.20005 [ 2.60009] ((5 . 1) (16 . 13) (17 . 14) (18 . 15) (21 . 20)) 4.507 {0/8:10} B:0 3.20006 [ 2.60012] ((5 . 1) (15 . 12) (16 . 13) (18 . 15) (21 . 20)) 4.812 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.9225] [2438, 3600]: Comparing 1ia6_A and 1ld8_B, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 24 (21 H + 3 S) secondary structure elements in 1ld8_B, of which 20 satisfy the size requirements. 2.66733 [ 3.33367] ((10 . 9) (11 . 11) (15 . 14) (16 . 16) (17 . 18) (18 . 19)) 7.573 {0/11:15} B:0 3.20009 [ 4.00005] ((11 . 8) (12 . 9) (17 . 14) (18 . 16) (21 . 20)) 5.329 {0/9:10} B:0 3.20017 [ 4.00009] ((13 . 4) (15 . 7) (16 . 8) (17 . 9) (18 . 10)) 6.214 {0/5:10} B:0 3.20019 [ 4.00010] ((11 . 4) (16 . 11) (17 . 12) (18 . 13) (21 . 18)) 6.376 {0/9:10} B:0 3.20026 [ 4.00014] ((10 . 14) (11 . 16) (12 . 18) (13 . 19) (15 . 20)) 6.902 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.8108 [and 1/min{score2}: 0.6495] [2438, 3613]: Comparing 1ia6_A and 1lf6_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 45 (22 H + 23 S) secondary structure elements in 1lf6_A, of which 18 satisfy the size requirements. 1.33423 [ 1.50063] ((1 . 23) (3 . 26) (5 . 27) (10 . 28) (11 . 30) (12 . 31) (13 . 32) (15 . 38) (16 . 39) (17 . 42) (18 . 43) (21 . 44)) 4.853 {0/54:66} B:0 2.66686 [ 3.00013] ((1 . 23) (10 . 31) (15 . 38) (16 . 39) (17 . 42) (18 . 43)) 5.540 {0/12:15} B:0 2.66724 [ 3.00040] ((10 . 28) (11 . 30) (12 . 31) (13 . 32) (18 . 39) (21 . 44)) 7.299 {0/12:15} B:0 3.20013 [ 3.60009] ((1 . 23) (10 . 31) (11 . 32) (17 . 42) (18 . 43)) 5.814 {0/8:10} B:0 3.20014 [ 3.60010] ((1 . 32) (5 . 39) (6 . 41) (10 . 42) (12 . 44)) 5.918 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.9290 [and 1/min{score2}: 0.8286] [2438, 4101]: Comparing 1ia6_A and 1n1b_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 30 (30 H + 0 S) secondary structure elements in 1n1b_A, of which 13 satisfy the size requirements. 2.42157 [ 2.31559] ((1 . 2) (3 . 3) (5 . 5) (10 . 7) (11 . 8) (12 . 10) (13 . 11) (15 . 12) (17 . 14)) 5.185 {6/27:36} B:0 2.48878 [ 2.39187] ((5 . 2) (10 . 3) (11 . 5) (12 . 7) (13 . 8) (15 . 10) (16 . 11) (17 . 12) (21 . 14)) 5.777 {6/26:36} B:0 2.66688 [ 2.16706] ((10 . 7) (11 . 8) (12 . 10) (13 . 11) (15 . 12) (16 . 14)) 5.688 {0/8:15} B:0 2.66698 [ 2.16725] ((12 . 7) (13 . 8) (15 . 10) (16 . 11) (17 . 12) (18 . 14)) 6.280 {0/9:15} B:0 2.72572 [ 2.65332] ((5 . 2) (10 . 3) (11 . 4) (12 . 7) (13 . 8) (15 . 10) (16 . 11) (17 . 12) (21 . 14)) 6.701 {7/27:36} B:0 SIMILARITY (1/min{score1}): 0.5623 [and 1/min{score2}: 0.6919] [2438, 4125]: Comparing 1ia6_A and 1n4q_B, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 24 (19 H + 5 S) secondary structure elements in 1n4q_B, of which 15 satisfy the size requirements. 2.28631 [ 2.14358] ((1 . 1) (11 . 14) (12 . 15) (13 . 17) (15 . 18) (16 . 20) (17 . 21)) 6.562 {0/17:21} B:0 2.76475 [ 2.61725] ((10 . 10) (11 . 11) (12 . 12) (17 . 18) (18 . 20) (21 . 24)) 9.857 {2/12:15} B:0 3.20013 [ 3.00016] ((12 . 10) (13 . 11) (17 . 15) (18 . 17) (21 . 21)) 5.790 {0/9:10} B:0 3.20025 [ 3.00030] ((1 . 6) (10 . 15) (11 . 17) (12 . 18) (15 . 21)) 6.778 {0/7:10} B:0 3.20038 [ 3.00046] ((1 . 6) (3 . 10) (11 . 17) (12 . 18) (15 . 21)) 7.564 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8110 [and 1/min{score2}: 0.8646] [2438, 4152]: Comparing 1ia6_A and 1n7o_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 59 (26 H + 33 S) secondary structure elements in 1n7o_A, of which 16 satisfy the size requirements. 1.33643 [ 1.33643] ((1 . 3) (3 . 5) (5 . 6) (10 . 8) (11 . 9) (12 . 12) (13 . 13) (15 . 17) (16 . 18) (17 . 24) (18 . 25) (21 . 27)) 6.573 {1/56:66} B:0 1.45608 [ 1.45608] ((1 . 3) (3 . 5) (5 . 6) (10 . 8) (11 . 9) (12 . 12) (13 . 13) (15 . 17) (16 . 18) (17 . 24) (18 . 25)) 5.930 {0/47:55} B:0 1.73280 [ 1.73280] ((1 . 3) (3 . 5) (5 . 6) (10 . 8) (11 . 9) (12 . 12) (13 . 13) (15 . 17) (16 . 18) (17 . 24) (18 . 27)) 5.716 {7/48:55} B:0 2.63435 [ 2.63435] ((3 . 5) (5 . 6) (10 . 8) (11 . 9) (12 . 12) (13 . 17) (15 . 24) (16 . 25)) 6.303 {5/21:28} B:0 2.64692 [ 2.64692] ((1 . 3) (3 . 5) (5 . 6) (10 . 8) (11 . 12) (12 . 17) (13 . 18) (15 . 24) (16 . 25)) 6.923 {7/28:36} B:0 SIMILARITY (1/min{score1}): 0.8115 [and 1/min{score2}: 0.8115] [2438, 4195]: Comparing 1ia6_A and 1nc5_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 19 (13 H + 6 S) secondary structure elements in 1nc5_A, of which 17 satisfy the size requirements. 1.33376 [ 1.41702] ((1 . 1) (3 . 2) (5 . 3) (10 . 4) (11 . 5) (12 . 7) (13 . 8) (15 . 10) (16 . 11) (17 . 12) (18 . 13) (21 . 19)) 4.030 {0/57:66} B:0 2.66681 [ 2.83345] ((13 . 1) (15 . 2) (16 . 3) (17 . 4) (18 . 5) (21 . 10)) 5.181 {0/14:15} B:0 2.66703 [ 2.83363] ((4 . 1) (10 . 4) (11 . 5) (12 . 7) (13 . 8) (21 . 19)) 6.508 {0/11:15} B:0 2.66705 [ 2.83365] ((1 . 3) (5 . 8) (10 . 10) (11 . 11) (12 . 12) (13 . 13)) 6.587 {0/12:15} B:0 2.97071 [ 3.03970] ((3 . 2) (10 . 4) (11 . 5) (12 . 7) (13 . 8) (16 . 10) (17 . 12)) 5.976 {4/15:21} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.7642] [2438, 4424]: Comparing 1ia6_A and 1nxc_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 37 (19 H + 18 S) secondary structure elements in 1nxc_A, of which 28 satisfy the size requirements. 1.89470 [ 2.38052] ((1 . 5) (3 . 8) (5 . 9) (6 . 10) (10 . 15) (11 . 16) (12 . 20) (13 . 21) (15 . 27) (16 . 28) (17 . 31) (18 . 32) (21 . 35)) 5.903 {11/61:78} B:0 1.92306 [ 2.51734] ((1 . 5) (3 . 8) (5 . 9) (10 . 15) (11 . 16) (12 . 20) (13 . 21) (15 . 27) (16 . 28) (17 . 31) (18 . 32) (21 . 35)) 5.883 {9/50:66} B:0 2.66697 [ 4.66672] ((1 . 1) (5 . 9) (11 . 16) (12 . 20) (13 . 21) (21 . 35)) 6.214 {0/13:15} B:0 3.20004 [ 5.60001] ((3 . 20) (5 . 21) (6 . 23) (12 . 31) (13 . 32)) 4.433 {0/9:10} B:0 3.20010 [ 5.60002] ((1 . 1) (15 . 20) (16 . 21) (17 . 27) (18 . 28)) 5.387 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8703 [and 1/min{score2}: 0.4997] [2438, 5273]: Comparing 1ia6_A and 1qaz_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 16 (16 H + 0 S) secondary structure elements in 1qaz_A, of which 14 satisfy the size requirements. 1.45725 [ 1.27676] ((1 . 2) (3 . 4) (5 . 5) (10 . 6) (11 . 7) (12 . 8) (13 . 9) (15 . 11) (16 . 12) (17 . 14) (21 . 16)) 6.840 {0/44:55} B:0 1.77852 [ 1.55667] ((4 . 1) (10 . 4) (11 . 5) (12 . 6) (13 . 7) (15 . 8) (16 . 9) (17 . 11) (21 . 16)) 5.754 {0/30:36} B:0 1.77858 [ 1.55676] ((10 . 4) (11 . 5) (12 . 6) (13 . 7) (15 . 8) (16 . 9) (17 . 11) (18 . 12) (21 . 16)) 5.871 {0/30:36} B:0 3.20036 [ 2.80054] ((15 . 4) (16 . 5) (17 . 6) (18 . 7) (21 . 11)) 7.483 {0/9:10} B:0 3.20072 [ 2.80108] ((3 . 6) (5 . 7) (10 . 11) (11 . 12) (15 . 16)) 8.877 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.7477 [and 1/min{score2}: 0.8527] [2438, 5710]: Comparing 1ia6_A and 1rwh_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 60 (22 H + 38 S) secondary structure elements in 1rwh_A, of which 15 satisfy the size requirements. 1.33579 [ 1.25297] ((1 . 2) (3 . 3) (5 . 4) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 15) (16 . 16) (17 . 22) (18 . 23) (21 . 24)) 6.253 {0/56:66} B:0 1.45568 [ 1.36501] ((1 . 2) (3 . 3) (5 . 4) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 15) (16 . 16) (17 . 22) (18 . 23)) 5.500 {0/47:55} B:0 1.79092 [ 1.68256] ((1 . 2) (3 . 3) (5 . 4) (10 . 5) (11 . 6) (12 . 10) (16 . 21) (17 . 22) (21 . 24)) 8.299 {2/29:36} B:0 3.01512 [ 2.98135] ((3 . 3) (5 . 4) (10 . 5) (11 . 6) (12 . 10) (13 . 11) (15 . 15) (16 . 22)) 4.514 {6/21:28} B:0 3.20072 [ 3.00088] ((5 . 1) (10 . 3) (11 . 4) (12 . 5) (13 . 6)) 8.877 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8115 [and 1/min{score2}: 0.8653] [2438, 6106]: Comparing 1ia6_A and 1ut9_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 36 (20 H + 16 S) secondary structure elements in 1ut9_A, of which 17 satisfy the size requirements. 1.14479 [ 1.21590] ((1 . 10) (3 . 15) (5 . 17) (6 . 20) (9 . 22) (10 . 24) (11 . 25) (12 . 26) (13 . 27) (15 . 29) (16 . 30) (17 . 31) (18 . 32) (21 . 36)) 4.317 {2/71:91} B:0 1.23125 [ 1.30809] ((1 . 10) (3 . 15) (5 . 17) (6 . 20) (10 . 24) (11 . 25) (12 . 26) (13 . 27) (15 . 29) (16 . 30) (17 . 31) (18 . 32) (21 . 36)) 3.717 {1/62:78} B:0 1.33350 [ 1.41681] ((1 . 10) (3 . 15) (5 . 17) (10 . 24) (11 . 25) (12 . 26) (13 . 27) (15 . 29) (16 . 30) (17 . 31) (18 . 32) (21 . 36)) 3.207 {0/52:66} B:0 3.20020 [ 3.40017] ((1 . 17) (10 . 26) (12 . 29) (13 . 30) (21 . 36)) 6.447 {0/7:10} B:0 3.20050 [ 3.40041] ((10 . 18) (15 . 26) (16 . 27) (17 . 29) (18 . 30)) 8.080 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.8735 [and 1/min{score2}: 0.8224] [2438, 6536]: Comparing 1ia6_A and 2sqc_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 37 (32 H + 5 S) secondary structure elements in 2sqc_A, of which 16 satisfy the size requirements. 1.33360 [ 1.33360] ((1 . 1) (3 . 21) (5 . 22) (10 . 24) (11 . 25) (12 . 27) (13 . 28) (15 . 29) (16 . 30) (17 . 33) (18 . 34) (21 . 37)) 3.582 {0/58:66} B:0 3.20026 [ 3.20026] ((10 . 21) (11 . 22) (17 . 27) (18 . 28) (21 . 33)) 6.878 {0/9:10} B:0 4.00016 [ 4.00016] ((1 . 25) (10 . 33) (11 . 34) (12 . 37)) 7.250 {0/4:6} B:0 4.00024 [ 4.00024] ((11 . 27) (12 . 28) (13 . 29) (15 . 30)) 8.007 {0/4:6} B:0 4.00033 [ 4.00033] ((1 . 25) (3 . 27) (10 . 33) (11 . 34)) 8.624 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7876 [and 1/min{score2}: 0.7876] [2438, 6537]: Comparing 1ia6_A and 2sqc_A, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 37 (32 H + 5 S) secondary structure elements in 2sqc_A, of which 13 satisfy the size requirements. 3.20009 [ 2.60018] ((3 . 3) (10 . 8) (16 . 16) (17 . 17) (18 . 18)) 5.341 {0/7:10} B:0 3.20016 [ 2.60030] ((3 . 5) (5 . 6) (13 . 16) (15 . 17) (16 . 18)) 6.081 {0/10:10} B:0 3.20017 [ 2.60032] ((3 . 8) (5 . 10) (11 . 16) (12 . 17) (13 . 18)) 6.201 {0/8:10} B:0 3.20030 [ 2.60055] ((10 . 3) (11 . 4) (12 . 5) (16 . 10) (17 . 12)) 7.103 {0/8:10} B:0 3.46387 [ 3.03460] ((4 . 8) (5 . 10) (11 . 16) (12 . 17) (13 . 18)) 7.228 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.7410 [and 1/min{score2}: 0.8985] [2438, 6622]: Comparing 1ia6_A and 5eau, based on their crossing files. There are 21 (18 H + 3 S) secondary structure elements in 1ia6_A, of which 16 satisfy the size requirements. There are 28 (28 H + 0 S) secondary structure elements in 5eau, of which 9 satisfy the size requirements. 2.00031 [ 1.12673] ((11 . 1) (12 . 2) (13 . 4) (15 . 5) (16 . 6) (17 . 8) (18 . 10) (21 . 11)) 5.047 {0/22:28} B:0 2.15989 [ 1.89054] ((1 . 1) (3 . 2) (5 . 4) (10 . 5) (11 . 6) (12 . 8) (13 . 10) (15 . 11) (17 . 12)) 5.506 {5/27:36} B:0 2.20601 [ 1.95787] ((5 . 1) (10 . 2) (11 . 4) (12 . 5) (13 . 6) (15 . 8) (16 . 10) (17 . 11) (21 . 12)) 5.781 {5/26:36} B:0 2.28595 [ 1.28703] ((11 . 1) (12 . 2) (13 . 4) (15 . 5) (16 . 6) (17 . 8) (18 . 10)) 5.206 {0/16:21} B:0 2.66690 [ 1.50134] ((12 . 5) (13 . 6) (15 . 8) (16 . 10) (17 . 11) (18 . 12)) 5.865 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.5097 [and 1/min{score2}: 0.8875] -------------------------------------------------------------------------------------------------------------------------