------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 246 1ayx ) ( 246 1ayx ) 1.0000 1.0000 0.0000 ( 0 138 171) 0 1.0000 1.0000 19 19 ( 246 1ayx ) ( 514 1c3d ) 0.6308 0.9182 6.6224 ( 0 56 66) 0 0.6313 0.9210 19 13 ( 246 1ayx ) ( 553 1cb8_A) 0.5783 0.7313 7.1356 ( 0 42 55) 0 0.6289 0.7915 19 15 ( 246 1ayx ) ( 627 1clc ) 0.6309 0.6658 6.4885 ( 0 51 66) 0 0.6311 0.6660 19 18 ( 246 1ayx ) ( 792 1dce_B) 0.6309 0.8543 6.3731 ( 0 56 66) 0 0.6799 0.9096 19 14 ( 246 1ayx ) ( 868 1dl2_A) 0.6831 0.4193 6.5731 ( 1 61 78) 0 0.7341 0.4514 19 31 ( 246 1ayx ) ( 1581 1fo3_A) 0.6479 0.4585 7.2868 ( 6 59 78) 0 0.6831 0.4645 19 28 ( 246 1ayx ) ( 1599 1fp3_A) 0.6808 0.6808 6.0229 ( 3 58 78) 0 0.7207 0.7207 19 19 ( 246 1ayx ) ( 1780 1g9g_A) 0.4199 0.3280 7.7896 ( 9 41 55) 0 0.6308 0.4102 19 31 ( 246 1ayx ) ( 1788 1gai ) 0.8946 0.9443 2.6519 ( 1 109 136) 0 0.8946 0.9443 19 18 ( 246 1ayx ) ( 1998 1gxm_A) 0.4210 0.5710 6.4564 ( 0 23 28) 0 0.4733 0.6411 19 14 ( 246 1ayx ) ( 2035 1h12_A) 0.6830 0.6830 6.0987 ( 2 63 78) 0 0.6830 0.6830 19 19 ( 246 1ayx ) ( 2085 1h54_A) 0.6837 0.4482 5.5852 ( 0 63 78) 0 0.7349 0.4825 19 29 ( 246 1ayx ) ( 2242 1hn0_A) 0.3278 0.3237 8.4652 ( 8 28 36) 0 0.6804 0.6471 19 20 ( 246 1ayx ) ( 2346 1hzf_A) 0.6309 0.9187 6.4598 ( 0 54 66) 0 0.6312 0.9208 19 13 ( 246 1ayx ) ( 2438 1ia6_A) 0.6310 0.7486 6.2962 ( 0 52 66) 0 0.6311 0.7489 19 16 ( 246 1ayx ) ( 2688 1j0m_A) 0.3157 0.3749 7.9619 ( 0 11 15) 0 0.6327 0.7479 19 16 ( 246 1ayx ) ( 3407 1kre_A) 0.6309 0.4137 6.5902 ( 0 54 66) 0 0.6825 0.4660 19 29 ( 246 1ayx ) ( 3413 1ks8_A) 0.6310 0.6659 6.2697 ( 0 51 66) 0 0.6310 0.6659 19 18 ( 246 1ayx ) ( 3460 1kwf_A) 0.6310 0.9189 6.3671 ( 0 52 66) 0 0.6312 0.9203 19 13 ( 246 1ayx ) ( 3600 1ld8_B) 0.6310 0.5995 6.3124 ( 0 51 66) 0 0.7295 0.6943 19 20 ( 246 1ayx ) ( 3613 1lf6_A) 0.6315 0.6665 4.2455 ( 0 59 66) 0 0.6821 0.7195 19 18 ( 246 1ayx ) ( 4101 1n1b_A) 0.2631 0.3843 10.3129 ( 0 7 10) 0 0.4788 0.6904 19 13 ( 246 1ayx ) ( 4125 1n4q_B) 0.6307 0.7971 6.9313 ( 0 54 66) 0 0.6777 0.8463 19 15 ( 246 1ayx ) ( 4152 1n7o_A) 0.6299 0.7462 7.3805 ( 2 53 66) 0 0.6306 0.7478 19 16 ( 246 1ayx ) ( 4195 1nc5_A) 0.6311 0.7051 5.8889 ( 0 55 66) 0 0.6311 0.7051 19 17 ( 246 1ayx ) ( 4424 1nxc_A) 0.6824 0.4640 7.4882 ( 0 58 78) 0 0.6827 0.4819 19 28 ( 246 1ayx ) ( 5273 1qaz_A) 0.6307 0.8532 6.8790 ( 0 47 66) 0 0.6307 0.8532 19 14 ( 246 1ayx ) ( 5710 1rwh_A) 0.6305 0.7966 7.2620 ( 0 53 66) 0 0.6307 0.7970 19 15 ( 246 1ayx ) ( 6106 1ut9_A) 0.6833 0.7631 6.2486 ( 1 58 78) 0 0.6833 0.7632 19 17 ( 246 1ayx ) ( 6536 2sqc_A) 0.5975 0.6507 6.6069 ( 9 67 78) 0 0.6715 0.7839 19 16 ( 246 1ayx ) ( 6537 2sqc_A) 0.2631 0.3841 10.9986 ( 0 8 10) 0 0.5262 0.7683 19 13 ( 246 1ayx ) ( 6622 5eau ) 0.4215 0.5284 8.0909 ( 5 27 36) 0 0.4618 0.8859 19 9 -------------------------------------------------------------------------------------------------------------------------