------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4195 1nc5_A) ( 246 1ayx ) 0.7051 0.6311 5.8889 ( 0 55 66) 0 0.7051 0.6311 17 19 ( 4195 1nc5_A) ( 514 1c3d ) 0.7056 0.9221 4.3846 ( 0 56 66) 0 0.7057 0.9224 17 13 ( 4195 1nc5_A) ( 553 1cb8_A) 0.6466 0.7324 5.8421 ( 0 43 55) 0 0.7051 0.7986 17 15 ( 4195 1nc5_A) ( 627 1clc ) 0.7057 0.6665 4.2185 ( 0 55 66) 0 0.7644 0.7220 17 18 ( 4195 1nc5_A) ( 792 1dce_B) 0.7056 0.8565 4.3712 ( 0 56 66) 0 0.7615 0.9201 17 14 ( 4195 1nc5_A) ( 868 1dl2_A) 0.7054 0.3871 5.0701 ( 0 54 66) 0 0.9293 0.5155 17 31 ( 4195 1nc5_A) ( 1581 1fo3_A) 0.5293 0.3214 5.0402 ( 0 30 36) 0 0.9382 0.5712 17 28 ( 4195 1nc5_A) ( 1599 1fp3_A) 0.7899 0.7169 4.4362 ( 6 76 91) 0 0.8045 0.7257 17 19 ( 4195 1nc5_A) ( 1780 1g9g_A) 0.8157 0.4512 3.8867 ( 4 75 91) 0 0.8786 0.5098 17 31 ( 4195 1nc5_A) ( 1788 1gai ) 0.7634 0.7212 5.0569 ( 2 62 78) 0 0.7634 0.7212 17 18 ( 4195 1nc5_A) ( 1998 1gxm_A) 0.5292 0.6424 5.7284 ( 0 29 36) 0 0.5292 0.6424 17 14 ( 4195 1nc5_A) ( 2035 1h12_A) 0.7052 0.6312 5.5779 ( 0 54 66) 0 0.8220 0.7360 17 19 ( 4195 1nc5_A) ( 2085 1h54_A) 0.7051 0.4137 5.8790 ( 0 53 66) 0 0.7658 0.4781 17 29 ( 4195 1nc5_A) ( 2242 1hn0_A) 0.5860 0.4990 6.6667 ( 2 36 45) 0 0.7559 0.6460 17 20 ( 4195 1nc5_A) ( 2346 1hzf_A) 0.7057 0.9223 4.1847 ( 0 56 66) 0 0.7058 0.9226 17 13 ( 4195 1nc5_A) ( 2438 1ia6_A) 0.7057 0.7498 4.0298 ( 0 57 66) 0 0.7642 0.8118 17 16 ( 4195 1nc5_A) ( 2688 1j0m_A) 0.3520 0.3737 5.7746 ( 1 11 15) 0 0.7636 0.8110 17 16 ( 4195 1nc5_A) ( 3407 1kre_A) 0.8205 0.4825 4.7299 ( 3 76 91) 0 0.8222 0.4827 17 29 ( 4195 1nc5_A) ( 3413 1ks8_A) 0.7057 0.6665 4.0912 ( 0 55 66) 0 0.8155 0.7717 17 18 ( 4195 1nc5_A) ( 3460 1kwf_A) 0.7056 0.9221 4.4317 ( 0 53 66) 0 0.7636 0.9957 17 13 ( 4195 1nc5_A) ( 3600 1ld8_B) 0.7056 0.5999 4.6569 ( 0 55 66) 0 0.7638 0.6496 17 20 ( 4195 1nc5_A) ( 3613 1lf6_A) 0.7055 0.6664 4.7507 ( 0 55 66) 0 0.8226 0.7771 17 18 ( 4195 1nc5_A) ( 4101 1n1b_A) 0.5029 0.6091 5.6498 ( 3 23 36) 0 0.5029 0.6091 17 13 ( 4195 1nc5_A) ( 4125 1n4q_B) 0.7057 0.7996 4.2592 ( 0 54 66) 0 0.7636 0.8646 17 15 ( 4195 1nc5_A) ( 4152 1n7o_A) 0.7052 0.7490 5.7275 ( 0 55 66) 0 0.7631 0.8104 17 16 ( 4195 1nc5_A) ( 4195 1nc5_A) 1.0000 1.0000 0.0000 ( 0 121 136) 0 1.0000 1.0000 17 17 ( 4195 1nc5_A) ( 4424 1nxc_A) 0.5293 0.3214 4.8629 ( 0 28 36) 0 0.9293 0.5704 17 28 ( 4195 1nc5_A) ( 5273 1qaz_A) 0.6461 0.7831 6.9417 ( 0 45 55) 0 0.6464 0.7839 17 14 ( 4195 1nc5_A) ( 5710 1rwh_A) 0.3431 0.3823 5.6316 ( 2 12 15) 0 0.7632 0.8639 17 15 ( 4195 1nc5_A) ( 6106 1ut9_A) 0.7056 0.7056 4.4350 ( 0 52 66) 0 0.7639 0.7639 17 17 ( 4195 1nc5_A) ( 6536 2sqc_A) 0.7058 0.7498 3.7436 ( 0 57 66) 0 0.7614 0.8081 17 16 ( 4195 1nc5_A) ( 6537 2sqc_A) 0.4117 0.5383 5.7034 ( 0 16 21) 0 0.7053 0.9210 17 13 ( 4195 1nc5_A) ( 6622 5eau ) 0.4705 0.8878 4.7594 ( 0 21 28) 0 0.5095 0.8878 17 9 -------------------------------------------------------------------------------------------------------------------------