------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 553 1cb8_A) ( 246 1ayx ) 0.6659 0.5261 6.3423 ( 0 32 45) 0 0.7915 0.6289 15 19 ( 553 1cb8_A) ( 514 1c3d ) 0.7324 0.8442 5.8506 ( 0 42 55) 0 0.7328 0.8451 15 13 ( 553 1cb8_A) ( 553 1cb8_A) 1.0000 1.0000 0.0000 ( 0 89 105) 0 1.0000 1.0000 15 15 ( 553 1cb8_A) ( 627 1clc ) 0.7314 0.6103 7.0384 ( 0 40 55) 0 0.7327 0.6341 15 18 ( 553 1cb8_A) ( 792 1dce_B) 0.6664 0.7139 4.8823 ( 0 35 45) 0 0.7328 0.7844 15 14 ( 553 1cb8_A) ( 868 1dl2_A) 0.7989 0.3871 5.2752 ( 1 48 66) 0 0.7989 0.4138 15 31 ( 553 1cb8_A) ( 1581 1fo3_A) 0.8581 0.4639 5.0283 ( 3 60 78) 0 0.8581 0.4639 15 28 ( 553 1cb8_A) ( 1599 1fp3_A) 0.7314 0.5784 6.9738 ( 0 42 55) 0 0.7955 0.6302 15 19 ( 553 1cb8_A) ( 1780 1g9g_A) 0.3332 0.1613 9.1331 ( 0 7 10) 0 0.7958 0.3870 15 31 ( 553 1cb8_A) ( 1788 1gai ) 0.7313 0.6103 7.0510 ( 0 42 55) 0 0.7930 0.6638 15 18 ( 553 1cb8_A) ( 1998 1gxm_A) 0.5992 0.6418 5.8569 ( 1 26 36) 0 0.5992 0.6418 15 14 ( 553 1cb8_A) ( 2035 1h12_A) 0.7319 0.5785 6.4468 ( 0 43 55) 0 0.7987 0.6312 15 19 ( 553 1cb8_A) ( 2085 1h54_A) 0.3333 0.1724 6.3606 ( 0 8 10) 0 0.8502 0.4476 15 29 ( 553 1cb8_A) ( 2242 1hn0_A) 0.8585 0.6480 4.3953 ( 3 60 78) 0 0.8623 0.6490 15 20 ( 553 1cb8_A) ( 2346 1hzf_A) 0.7321 0.8437 6.2371 ( 0 42 55) 0 0.7326 0.8446 15 13 ( 553 1cb8_A) ( 2438 1ia6_A) 0.7319 0.6865 6.4869 ( 0 42 55) 0 0.7940 0.7456 15 16 ( 553 1cb8_A) ( 2688 1j0m_A) 0.9321 0.8741 2.6466 ( 2 71 91) 0 0.9321 0.8741 15 16 ( 553 1cb8_A) ( 3407 1kre_A) 0.7991 0.4138 5.1236 ( 0 46 66) 0 0.7991 0.4434 15 29 ( 553 1cb8_A) ( 3413 1ks8_A) 0.7320 0.6106 6.3782 ( 0 41 55) 0 0.7949 0.6646 15 18 ( 553 1cb8_A) ( 3460 1kwf_A) 0.7322 0.8438 6.1794 ( 0 42 55) 0 0.7905 0.9041 15 13 ( 553 1cb8_A) ( 3600 1ld8_B) 0.7322 0.5497 6.1462 ( 0 42 55) 0 0.8611 0.6487 15 20 ( 553 1cb8_A) ( 3613 1lf6_A) 0.7315 0.6104 6.9481 ( 0 44 55) 0 0.7400 0.6516 15 18 ( 553 1cb8_A) ( 4101 1n1b_A) 0.5332 0.6151 5.1814 ( 0 18 28) 0 0.5332 0.6151 15 13 ( 553 1cb8_A) ( 4125 1n4q_B) 0.7324 0.7324 5.8420 ( 0 43 55) 0 0.7870 0.7870 15 15 ( 553 1cb8_A) ( 4152 1n7o_A) 0.9322 0.8742 2.5237 ( 2 72 91) 0 0.9322 0.8742 15 16 ( 553 1cb8_A) ( 4195 1nc5_A) 0.7324 0.6466 5.8421 ( 0 43 55) 0 0.7986 0.7051 15 17 ( 553 1cb8_A) ( 4424 1nxc_A) 0.8639 0.4642 4.8390 ( 2 58 78) 0 0.8639 0.4642 15 28 ( 553 1cb8_A) ( 5273 1qaz_A) 0.5998 0.6426 4.7488 ( 0 26 36) 0 0.6409 0.6656 15 14 ( 553 1cb8_A) ( 5710 1rwh_A) 0.8664 0.8664 3.2228 ( 1 62 78) 0 0.8664 0.8664 15 15 ( 553 1cb8_A) ( 6106 1ut9_A) 0.4457 0.4323 6.4165 ( 7 33 45) 0 0.7326 0.6467 15 17 ( 553 1cb8_A) ( 6536 2sqc_A) 0.7324 0.6868 5.8986 ( 0 43 55) 0 0.7328 0.6871 15 16 ( 553 1cb8_A) ( 6537 2sqc_A) 0.5994 0.6911 6.6336 ( 0 27 36) 0 0.6324 0.6911 15 13 ( 553 1cb8_A) ( 6622 5eau ) 0.5331 0.8860 6.0741 ( 0 17 28) 0 0.5989 0.9857 15 9 -------------------------------------------------------------------------------------------------------------------------