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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6073 1up8_A)  (  737 1d2t_A)     0.1379   0.3994  11.3132 (   0    2    6)   0     0.3058   0.5924   29  10
( 6073 1up8_A)  ( 5348 1qi9_A)     0.6885   0.8305   2.1337 (   6  146  190)   0     0.6885   0.8305   29  24
( 6073 1up8_A)  ( 6073 1up8_A)     1.0000   1.0000   0.0000 (   0  326  406)   0     1.0000   1.0000   29  29
( 6073 1up8_A)  ( 6313 1vns  )     0.1724   0.2381   7.7962 (   0    7   10)   0     0.3447   0.4754   29  21

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