-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 4225 1nf1_A)  ( 1424 1f7c_A)     0.4596   0.6550   5.9654 (   1   13   15)   0     0.4596   0.6550   13   9
( 4225 1nf1_A)  ( 4225 1nf1_A)     1.0000   1.0000   0.0000 (   0   65   78)   0     1.0000   1.0000   13  13
( 4225 1nf1_A)  ( 4963 1pbw_A)     0.3077   0.4996   7.6766 (   0    2    6)   0     0.4615   0.7493   13   8
( 4225 1nf1_A)  ( 5938 1tx4_A)     0.3077   0.3999   7.3125 (   0    5    6)   0     0.4612   0.5987   13  10
( 4225 1nf1_A)  ( 6329 1wer  )     0.9983   0.7219   4.5246 (   1   63   78)   0     0.9983   0.7219   13  18

-------------------------------------------------------------------------------------------------------------------------