------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [3434, 16]: Comparing 1ku1_A and 1a17, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1a17, of which 7 satisfy the size requirements. 2.38195 [ 2.26518] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (6 . 6) (10 . 7)) 8.722 {2/9:15} B:0 2.50425 [ 1.76228] ((1 . 1) (2 . 2) (5 . 4) (7 . 7)) 11.491 {0/5:6} B:0 5.07659 [ 5.01889] ((1 . 1) (2 . 2) (3 . 4) (10 . 7)) 9.458 {2/4:6} B:0 6.04472 [ 6.01084] ((1 . 1) (2 . 2) (5 . 4) (7 . 6)) 5.406 {3/5:6} B:0 6.69950 [ 6.67468] ((1 . 2) (2 . 3) (5 . 5) (7 . 7)) 9.809 {2/3:6} B:0 SIMILARITY (1/min{score1}): 0.4198 [and 1/min{score2}: 0.5707] [3434, 287]: Comparing 1ku1_A and 1b3u_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 48 (48 H + 0 S) secondary structure elements in 1b3u_A, of which 43 satisfy the size requirements. 1.48697 [ 6.14364] ((1 . 25) (2 . 27) (5 . 31) (7 . 34) (10 . 37) (11 . 39) (12 . 41)) 7.198 {1/11:21} B:0 1.70033 [ 6.14738] ((1 . 4) (3 . 6) (4 . 8) (5 . 9) (10 . 14) (11 . 16) (12 . 18)) 6.586 {1/7:21} B:0 1.78626 [ 5.38742] ((1 . 15) (2 . 16) (3 . 18) (4 . 20) (5 . 21) (7 . 24) (10 . 26) (11 . 30)) 6.251 {2/12:28} B:0 1.85771 [ 6.15119] ((1 . 21) (3 . 24) (4 . 25) (5 . 26) (7 . 29) (10 . 31) (11 . 34)) 6.600 {2/12:21} B:0 1.97223 [ 6.15465] ((1 . 21) (2 . 22) (3 . 24) (4 . 25) (5 . 26) (10 . 31) (11 . 34)) 6.992 {2/11:21} B:0 SIMILARITY (1/min{score1}): 0.6725 [and 1/min{score2}: 0.2071] [3434, 314]: Comparing 1ku1_A and 1b89_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 22 (22 H + 0 S) secondary structure elements in 1b89_A, of which 22 satisfy the size requirements. 2.00132 [ 4.40012] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9)) 7.259 {0/4:10} B:0 2.00164 [ 4.40015] ((3 . 9) (6 . 13) (10 . 15) (11 . 16) (12 . 17)) 7.660 {0/0:10} B:0 2.37866 [ 4.44626] ((1 . 8) (3 . 11) (4 . 12) (10 . 15) (11 . 17)) 5.428 {1/5:10} B:0 2.50016 [ 5.50002] ((1 . 17) (2 . 18) (4 . 19) (5 . 20)) 5.095 {0/4:6} B:0 2.50018 [ 5.50002] ((1 . 10) (2 . 11) (4 . 12) (5 . 13)) 5.184 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6470 [and 1/min{score2}: 0.3169] [3434, 444]: Comparing 1ku1_A and 1bpo_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 41 (13 H + 28 S) secondary structure elements in 1bpo_A, of which 10 satisfy the size requirements. 2.07361 [ 2.07361] ((2 . 31) (4 . 32) (5 . 33) (7 . 34) (10 . 37)) 7.470 {1/8:10} B:0 2.20743 [ 2.20743] ((3 . 34) (5 . 37) (7 . 38) (10 . 40) (12 . 41)) 6.517 {1/6:10} B:0 2.50136 [ 2.50136] ((2 . 31) (5 . 33) (10 . 39) (11 . 41)) 8.640 {0/4:6} B:0 2.50138 [ 2.50138] ((1 . 31) (2 . 32) (7 . 38) (10 . 41)) 8.670 {0/4:6} B:0 2.72461 [ 2.72461] ((1 . 34) (2 . 36) (3 . 37) (6 . 40)) 7.407 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4822 [and 1/min{score2}: 0.4822] [3434, 789]: Comparing 1ku1_A and 1dce_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 36 (22 H + 14 S) secondary structure elements in 1dce_A, of which 15 satisfy the size requirements. 2.00167 [ 3.00050] ((3 . 1) (4 . 2) (7 . 4) (10 . 7) (11 . 8)) 7.697 {0/3:10} B:0 2.20724 [ 3.06920] ((1 . 2) (2 . 3) (5 . 5) (7 . 7) (10 . 8)) 5.986 {1/6:10} B:0 2.38868 [ 2.65215] ((1 . 6) (2 . 7) (3 . 8) (5 . 9) (6 . 10) (7 . 11) (10 . 22)) 6.698 {3/13:21} B:0 2.50011 [ 3.75003] ((1 . 4) (2 . 5) (5 . 7) (7 . 9)) 4.608 {0/3:6} B:0 2.50022 [ 3.75007] ((1 . 8) (2 . 9) (4 . 10) (5 . 11)) 5.509 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.4996 [and 1/min{score2}: 0.3771] [3434, 954]: Comparing 1ku1_A and 1dvp_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 14 (10 H + 4 S) secondary structure elements in 1dvp_A, of which 8 satisfy the size requirements. 2.00083 [ 1.60162] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 8)) 6.457 {0/6:10} B:0 2.20700 [ 1.94389] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 8)) 4.929 {1/6:10} B:0 2.50010 [ 2.00019] ((1 . 2) (2 . 3) (5 . 6) (7 . 8)) 4.443 {0/2:6} B:0 2.50013 [ 2.00026] ((3 . 1) (4 . 2) (5 . 3) (7 . 5)) 4.847 {0/5:6} B:0 2.50028 [ 2.00055] ((1 . 1) (2 . 2) (4 . 4) (7 . 7)) 5.836 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.6246] [3434, 1069]: Comparing 1ku1_A and 1e7u_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 61 (37 H + 24 S) secondary structure elements in 1e7u_A, of which 12 satisfy the size requirements. 1.98335 [ 2.20776] ((2 . 27) (3 . 30) (5 . 31) (6 . 33) (7 . 34) (10 . 35)) 7.233 {1/6:15} B:0 2.00051 [ 2.40030] ((1 . 30) (2 . 31) (3 . 32) (5 . 34) (7 . 36)) 5.733 {0/7:10} B:0 2.00053 [ 2.40030] ((1 . 27) (3 . 31) (4 . 33) (5 . 34) (7 . 36)) 5.764 {0/5:10} B:0 2.50008 [ 3.00004] ((1 . 32) (3 . 34) (4 . 35) (5 . 36)) 4.201 {0/2:6} B:0 2.50016 [ 3.00009] ((1 . 30) (2 . 31) (5 . 34) (7 . 36)) 5.080 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5042 [and 1/min{score2}: 0.4529] [3434, 1118]: Comparing 1ku1_A and 1ee4_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 28 (28 H + 0 S) secondary structure elements in 1ee4_A, of which 28 satisfy the size requirements. 1.43155 [ 4.00014] ((1 . 4) (2 . 5) (3 . 8) (4 . 10) (5 . 11) (10 . 16) (11 . 17)) 6.914 {0/12:21} B:0 1.45944 [ 4.00145] ((1 . 12) (3 . 13) (4 . 15) (5 . 16) (7 . 18) (10 . 22) (11 . 23)) 6.142 {1/13:21} B:0 1.46311 [ 4.00163] ((1 . 17) (3 . 19) (4 . 20) (5 . 22) (7 . 24) (10 . 25) (11 . 26)) 8.156 {1/13:21} B:0 1.85743 [ 4.02989] ((1 . 7) (3 . 11) (4 . 12) (5 . 13) (7 . 15) (10 . 17) (11 . 20)) 6.144 {2/12:21} B:0 1.85858 [ 4.03000] ((1 . 4) (3 . 8) (4 . 10) (5 . 11) (10 . 14) (11 . 17) (12 . 19)) 7.614 {2/12:21} B:0 SIMILARITY (1/min{score1}): 0.6985 [and 1/min{score2}: 0.2786] [3434, 1205]: Comparing 1ku1_A and 1elk_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1elk_A, of which 9 satisfy the size requirements. 1.60609 [ 1.51165] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 9) (10 . 10)) 7.471 {2/16:21} B:0 1.69358 [ 1.53647] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (10 . 10)) 6.568 {1/12:15} B:0 2.00099 [ 1.80136] ((1 . 5) (2 . 6) (3 . 8) (4 . 9) (5 . 10)) 6.757 {0/6:10} B:0 2.11935 [ 1.95715] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (7 . 10)) 5.041 {1/7:10} B:0 2.12033 [ 1.95840] ((3 . 2) (4 . 3) (5 . 4) (7 . 6) (10 . 9)) 7.461 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6226 [and 1/min{score2}: 0.6615] [3434, 1206]: Comparing 1ku1_A and 1elr_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1elr_A, of which 7 satisfy the size requirements. 2.00110 [ 1.40321] ((1 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6)) 6.937 {0/2:10} B:0 2.50028 [ 1.75081] ((1 . 2) (3 . 3) (4 . 4) (5 . 5)) 5.801 {0/1:6} B:0 2.50062 [ 1.75181] ((1 . 4) (2 . 5) (3 . 6) (5 . 7)) 7.107 {0/2:6} B:0 2.50071 [ 1.75206] ((4 . 1) (5 . 2) (7 . 4) (11 . 7)) 7.334 {0/2:6} B:0 2.50095 [ 1.75277] ((1 . 2) (2 . 3) (3 . 4) (5 . 5)) 7.903 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.4997 [and 1/min{score2}: 0.7127] [3434, 1210]: Comparing 1ku1_A and 1elw_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1elw_A, of which 7 satisfy the size requirements. 5.07637 [ 5.01867] ((1 . 1) (2 . 2) (5 . 4) (7 . 6)) 4.547 {2/4:6} B:0 5.07640 [ 5.01870] ((4 . 1) (5 . 2) (7 . 4) (11 . 7)) 6.333 {2/4:6} B:0 5.07641 [ 5.01871] ((1 . 1) (2 . 2) (5 . 4) (6 . 5)) 6.594 {2/4:6} B:0 5.07659 [ 5.01889] ((1 . 2) (2 . 3) (3 . 4) (6 . 7)) 9.416 {2/4:6} B:0 7.50949 [ 7.50231] ((4 . 1) (5 . 2) (7 . 3) (10 . 5) (11 . 7)) 7.562 {3/4:10} B:0 SIMILARITY (1/min{score1}): 0.1970 [and 1/min{score2}: 0.1993] [3434, 1315]: Comparing 1ku1_A and 1eyh_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1eyh_A, of which 8 satisfy the size requirements. 2.00050 [ 1.60097] ((3 . 1) (4 . 2) (5 . 3) (7 . 5) (10 . 8)) 5.677 {0/8:10} B:0 2.20712 [ 1.94408] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7)) 5.545 {1/6:10} B:0 2.50007 [ 2.00014] ((1 . 3) (2 . 4) (4 . 6) (5 . 7)) 4.174 {0/3:6} B:0 2.50272 [ 2.00529] ((1 . 3) (2 . 4) (4 . 6) (7 . 8)) 10.275 {0/4:6} B:0 2.97345 [ 2.72461] ((7 . 1) (10 . 4) (11 . 5) (12 . 7)) 7.405 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.6246] [3434, 1470]: Comparing 1ku1_A and 1fch_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 18 (18 H + 0 S) secondary structure elements in 1fch_A, of which 17 satisfy the size requirements. 2.00104 [ 3.40021] ((1 . 13) (3 . 14) (4 . 15) (5 . 16) (7 . 17)) 6.843 {0/3:10} B:0 2.38099 [ 3.07034] ((1 . 2) (2 . 3) (3 . 5) (4 . 6) (6 . 7) (10 . 10)) 6.983 {2/9:15} B:0 2.50016 [ 4.25003] ((1 . 14) (2 . 15) (4 . 16) (5 . 17)) 5.077 {0/1:6} B:0 2.50032 [ 4.25007] ((1 . 14) (3 . 15) (4 . 16) (5 . 17)) 6.017 {0/1:6} B:0 2.50032 [ 4.25007] ((1 . 13) (3 . 14) (4 . 15) (5 . 16)) 6.028 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5814 [and 1/min{score2}: 0.3515] [3434, 1983]: Comparing 1ku1_A and 1gw5_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 36 (34 H + 2 S) secondary structure elements in 1gw5_A, of which 32 satisfy the size requirements. 1.43498 [ 4.57163] ((1 . 23) (3 . 25) (4 . 26) (5 . 27) (7 . 28) (10 . 29) (11 . 30)) 8.378 {0/7:21} B:0 1.66800 [ 5.33337] ((1 . 15) (3 . 18) (4 . 21) (10 . 25) (11 . 26) (12 . 27)) 6.342 {0/8:15} B:0 1.66858 [ 5.33339] ((1 . 23) (3 . 25) (4 . 26) (5 . 27) (7 . 28) (10 . 29)) 6.946 {0/6:15} B:0 2.00047 [ 6.40001] ((1 . 19) (4 . 21) (5 . 22) (10 . 27) (11 . 28)) 5.597 {0/6:10} B:0 2.00108 [ 6.40003] ((1 . 22) (2 . 23) (4 . 25) (5 . 26) (11 . 31)) 6.907 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6969 [and 1/min{score2}: 0.2611] [3434, 1984]: Comparing 1ku1_A and 1gw5_B, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 33 (33 H + 0 S) secondary structure elements in 1gw5_B, of which 32 satisfy the size requirements. 1.48657 [ 4.57331] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (10 . 9) (11 . 10) (12 . 11)) 6.954 {1/11:21} B:0 2.00072 [ 6.40002] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 8)) 6.224 {0/6:10} B:0 2.00077 [ 6.40002] ((1 . 23) (2 . 24) (3 . 26) (4 . 27) (5 . 28)) 6.340 {0/7:10} B:0 2.00100 [ 6.40003] ((1 . 23) (2 . 24) (4 . 25) (5 . 26) (10 . 30)) 6.770 {0/9:10} B:0 2.11974 [ 6.40399] ((1 . 23) (3 . 24) (4 . 25) (5 . 26) (10 . 28)) 6.340 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6727 [and 1/min{score2}: 0.2494] [3434, 2101]: Comparing 1ku1_A and 1h6k_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 42 (40 H + 2 S) secondary structure elements in 1h6k_A, of which 13 satisfy the size requirements. 2.00059 [ 2.60027] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 13)) 5.925 {0/5:10} B:0 2.07276 [ 2.63429] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 5)) 5.793 {1/8:10} B:0 2.37895 [ 2.80297] ((3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 13)) 6.598 {1/5:10} B:0 2.50007 [ 3.25003] ((3 . 2) (4 . 3) (5 . 4) (7 . 6)) 4.165 {0/4:6} B:0 2.50028 [ 3.25013] ((2 . 1) (3 . 2) (4 . 3) (5 . 4)) 5.804 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.3846] [3434, 2102]: Comparing 1ku1_A and 1h6k_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 42 (40 H + 2 S) secondary structure elements in 1h6k_A, of which 10 satisfy the size requirements. 1.71877 [ 1.71877] ((3 . 18) (4 . 19) (5 . 20) (7 . 22) (10 . 25) (11 . 26)) 5.179 {1/10:15} B:0 1.91114 [ 1.91114] ((1 . 22) (3 . 23) (4 . 24) (5 . 25) (6 . 26) (7 . 27)) 6.178 {2/13:15} B:0 2.24301 [ 2.24301] ((2 . 19) (3 . 20) (4 . 21) (5 . 22) (7 . 24) (10 . 25) (11 . 26)) 7.983 {3/14:21} B:0 2.50029 [ 2.50029] ((1 . 24) (2 . 25) (3 . 26) (4 . 27)) 5.879 {0/4:6} B:0 2.50051 [ 2.50051] ((7 . 22) (10 . 25) (11 . 26) (12 . 27)) 6.775 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6075 [and 1/min{score2}: 0.6075] [3434, 2103]: Comparing 1ku1_A and 1h6k_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 42 (40 H + 2 S) secondary structure elements in 1h6k_A, of which 15 satisfy the size requirements. 1.66896 [ 2.50068] ((1 . 28) (5 . 32) (6 . 33) (7 . 34) (10 . 35) (11 . 39)) 7.268 {0/12:15} B:0 2.00161 [ 3.00048] ((5 . 28) (7 . 30) (10 . 34) (11 . 35) (12 . 37)) 7.620 {0/7:10} B:0 2.07799 [ 3.02420] ((1 . 32) (5 . 36) (6 . 37) (10 . 39) (12 . 42)) 10.755 {1/8:10} B:0 2.50036 [ 3.75011] ((5 . 28) (6 . 29) (7 . 30) (11 . 35)) 6.215 {0/5:6} B:0 2.50078 [ 3.75023] ((7 . 28) (10 . 29) (11 . 30) (12 . 32)) 7.529 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7198 [and 1/min{score2}: 0.5203] [3434, 2197]: Comparing 1ku1_A and 1hf8_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 11 (11 H + 0 S) secondary structure elements in 1hf8_A, of which 6 satisfy the size requirements. 2.20836 [ 1.77190] ((3 . 1) (4 . 2) (5 . 3) (7 . 5) (10 . 6)) 8.158 {1/6:10} B:0 2.37898 [ 2.06273] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 6)) 6.676 {1/5:10} B:0 2.50009 [ 1.50044] ((3 . 1) (4 . 2) (5 . 3) (7 . 5)) 4.441 {0/5:6} B:0 2.72423 [ 2.14267] ((2 . 2) (3 . 3) (4 . 4) (5 . 5)) 5.625 {1/5:6} B:0 2.97312 [ 2.57750] ((1 . 2) (2 . 3) (3 . 4) (4 . 5)) 5.191 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4528 [and 1/min{score2}: 0.6665] [3434, 2213]: Comparing 1ku1_A and 1hh8_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 13 (11 H + 2 S) secondary structure elements in 1hh8_A, of which 12 satisfy the size requirements. 2.20744 [ 2.37894] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (10 . 10) (12 . 11)) 6.559 {2/10:15} B:0 2.50012 [ 3.00007] ((1 . 1) (2 . 2) (5 . 4) (10 . 11)) 4.674 {0/5:6} B:0 2.50016 [ 3.00009] ((1 . 1) (2 . 2) (6 . 6) (10 . 11)) 5.079 {0/4:6} B:0 2.50021 [ 3.00012] ((1 . 5) (2 . 6) (4 . 10) (5 . 11)) 5.398 {0/1:6} B:0 2.50023 [ 3.00013] ((1 . 6) (3 . 10) (4 . 11) (5 . 12)) 5.528 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6070 [and 1/min{score2}: 0.5391] [3434, 2252]: Comparing 1ku1_A and 1ho8_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 29 (29 H + 0 S) secondary structure elements in 1ho8_A, of which 27 satisfy the size requirements. 1.69352 [ 4.50140] ((1 . 11) (2 . 13) (3 . 16) (4 . 17) (5 . 18) (7 . 20)) 6.500 {1/12:15} B:0 1.98256 [ 4.52107] ((1 . 11) (3 . 16) (4 . 17) (5 . 18) (6 . 19) (7 . 20)) 5.771 {2/12:15} B:0 2.00066 [ 5.40003] ((3 . 5) (4 . 6) (5 . 7) (7 . 9) (11 . 17)) 6.089 {0/6:10} B:0 2.07879 [ 4.52977] ((1 . 11) (2 . 14) (3 . 16) (4 . 17) (5 . 18) (7 . 20)) 6.647 {2/11:15} B:0 2.11948 [ 5.40662] ((1 . 16) (2 . 17) (3 . 18) (4 . 19) (5 . 20)) 5.591 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6074 [and 1/min{score2}: 0.3222] [3434, 2276]: Comparing 1ku1_A and 1hs6_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 50 (28 H + 22 S) secondary structure elements in 1hs6_A, of which 10 satisfy the size requirements. 1.71980 [ 1.71980] ((1 . 43) (2 . 44) (3 . 47) (4 . 48) (5 . 49) (7 . 50)) 6.773 {1/10:15} B:0 2.00039 [ 2.00039] ((1 . 43) (2 . 44) (3 . 47) (4 . 48) (5 . 49)) 5.359 {0/7:10} B:0 2.11946 [ 2.11946] ((1 . 43) (2 . 44) (3 . 47) (4 . 48) (6 . 49)) 5.501 {1/7:10} B:0 2.20792 [ 2.20792] ((1 . 40) (2 . 42) (5 . 47) (7 . 48) (10 . 50)) 7.515 {1/6:10} B:0 2.20859 [ 2.20859] ((1 . 42) (2 . 44) (4 . 46) (5 . 47) (7 . 48) (10 . 50)) 8.439 {2/10:15} B:0 SIMILARITY (1/min{score1}): 0.5815 [and 1/min{score2}: 0.5815] [3434, 2292]: Comparing 1ku1_A and 1hu3_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1hu3_A, of which 10 satisfy the size requirements. 2.11981 [ 2.11981] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6)) 6.504 {1/7:10} B:0 2.37885 [ 2.37885] ((3 . 3) (4 . 4) (5 . 5) (7 . 7) (11 . 10)) 6.244 {1/5:10} B:0 2.38100 [ 2.38100] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (11 . 10)) 7.019 {2/9:15} B:0 2.50021 [ 2.50021] ((1 . 5) (3 . 6) (4 . 7) (5 . 8)) 5.422 {0/1:6} B:0 2.50040 [ 2.50040] ((5 . 1) (7 . 3) (11 . 5) (12 . 6)) 6.379 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4717 [and 1/min{score2}: 0.4717] [3434, 2342]: Comparing 1ku1_A and 1hz4_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 19 (19 H + 0 S) secondary structure elements in 1hz4_A, of which 18 satisfy the size requirements. 2.00069 [ 3.60012] ((1 . 13) (2 . 14) (4 . 15) (5 . 16) (7 . 18)) 6.175 {0/6:10} B:0 2.00175 [ 3.60030] ((1 . 1) (2 . 2) (5 . 4) (11 . 9) (12 . 10)) 7.784 {0/8:10} B:0 2.00357 [ 3.60061] ((1 . 3) (2 . 4) (5 . 6) (10 . 10) (12 . 12)) 9.310 {0/6:10} B:0 2.05325 [ 3.60947] ((1 . 5) (2 . 6) (5 . 8) (10 . 12) (12 . 14)) 11.305 {1/9:10} B:0 2.07527 [ 3.61358] ((1 . 2) (3 . 3) (4 . 4) (10 . 9) (12 . 11)) 9.144 {1/8:10} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.3020] [3434, 2493]: Comparing 1ku1_A and 1ihg_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 21 (11 H + 10 S) secondary structure elements in 1ihg_A, of which 7 satisfy the size requirements. 2.50015 [ 1.75042] ((1 . 17) (2 . 18) (4 . 19) (5 . 20)) 4.939 {0/3:6} B:0 2.50052 [ 1.75151] ((1 . 15) (2 . 16) (5 . 18) (7 . 19)) 6.794 {0/4:6} B:0 2.50060 [ 1.75176] ((1 . 15) (2 . 16) (3 . 17) (5 . 18)) 7.054 {0/2:6} B:0 2.50085 [ 1.75248] ((1 . 16) (3 . 17) (4 . 18) (7 . 20)) 7.690 {0/4:6} B:0 3.57102 [ 3.39555] ((1 . 16) (3 . 17) (4 . 18) (5 . 19)) 8.990 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.5713] [3434, 2698]: Comparing 1ku1_A and 1j1j_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1j1j_A, of which 9 satisfy the size requirements. 1.67990 [ 1.51804] ((2 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (10 . 7)) 11.290 {0/11:15} B:0 1.75656 [ 1.61878] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6)) 11.640 {1/9:15} B:0 2.50139 [ 2.25191] ((4 . 3) (5 . 4) (7 . 6) (10 . 7)) 8.694 {0/5:6} B:0 2.50283 [ 2.25388] ((5 . 4) (6 . 5) (7 . 6) (11 . 8)) 10.381 {0/5:6} B:0 2.50683 [ 2.25935] ((1 . 2) (2 . 3) (5 . 5) (6 . 6)) 12.948 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5953 [and 1/min{score2}: 0.6587] [3434, 2829]: Comparing 1ku1_A and 1jdh_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 34 (34 H + 0 S) secondary structure elements in 1jdh_A, of which 34 satisfy the size requirements. 1.66733 [ 5.66668] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (10 . 15)) 5.320 {0/10:15} B:0 1.66766 [ 5.66669] ((1 . 22) (2 . 23) (3 . 24) (4 . 25) (5 . 26) (10 . 30)) 5.898 {0/11:15} B:0 1.66768 [ 5.66669] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (10 . 20)) 5.925 {0/10:15} B:0 2.00026 [ 6.80001] ((1 . 2) (3 . 4) (4 . 5) (5 . 6) (10 . 12)) 4.846 {0/6:10} B:0 2.00036 [ 6.80001] ((1 . 28) (2 . 29) (3 . 30) (4 . 31) (5 . 32)) 5.255 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6945 [and 1/min{score2}: 0.2287] [3434, 3216]: Comparing 1ku1_A and 1k8k_G, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1k8k_G, of which 7 satisfy the size requirements. 1.66988 [ 1.17595] ((3 . 3) (4 . 4) (5 . 5) (7 . 7) (10 . 8) (11 . 9)) 7.909 {0/6:15} B:0 2.00178 [ 1.40515] ((3 . 3) (4 . 4) (7 . 7) (10 . 8) (11 . 9)) 7.814 {0/4:10} B:0 2.11944 [ 1.68283] ((3 . 4) (4 . 5) (5 . 6) (7 . 8) (10 . 9)) 5.421 {1/7:10} B:0 2.11999 [ 1.68393] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9)) 6.885 {1/7:10} B:0 2.50047 [ 1.75136] ((1 . 3) (2 . 6) (3 . 7) (5 . 9)) 6.614 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5988 [and 1/min{score2}: 0.8504] [3434, 3353]: Comparing 1ku1_A and 1klx_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1klx_A, of which 8 satisfy the size requirements. 2.00089 [ 1.60174] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (7 . 5)) 6.577 {0/6:10} B:0 2.50028 [ 2.00055] ((1 . 1) (3 . 2) (4 . 3) (5 . 4)) 5.825 {0/4:6} B:0 2.50033 [ 2.00065] ((1 . 3) (2 . 4) (4 . 5) (5 . 6)) 6.084 {0/4:6} B:0 2.50065 [ 2.00126] ((1 . 3) (2 . 4) (5 . 6) (7 . 7)) 7.171 {0/4:6} B:0 2.97379 [ 2.72505] ((2 . 1) (5 . 2) (7 . 4) (10 . 5)) 8.539 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.6243] [3434, 3392]: Comparing 1ku1_A and 1kps_B, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1kps_B, of which 9 satisfy the size requirements. 2.01766 [ 1.97258] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (10 . 9)) 7.496 {3/16:21} B:0 2.50072 [ 2.25098] ((1 . 6) (3 . 7) (4 . 8) (5 . 9)) 7.358 {0/1:6} B:0 2.50075 [ 2.25103] ((5 . 4) (6 . 5) (7 . 6) (10 . 7)) 7.440 {0/4:6} B:0 2.72423 [ 2.65348] ((2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 8)) 5.617 {2/8:10} B:0 2.72479 [ 2.54101] ((3 . 2) (5 . 4) (6 . 5) (7 . 6)) 7.928 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4996 [and 1/min{score2}: 0.5549] [3434, 3424]: Comparing 1ku1_A and 1kt1_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1kt1_A, of which 7 satisfy the size requirements. 2.00527 [ 1.41518] ((1 . 19) (2 . 20) (4 . 21) (5 . 22) (7 . 23)) 10.264 {0/4:10} B:0 2.50012 [ 1.75034] ((1 . 19) (2 . 20) (4 . 21) (5 . 22)) 4.663 {0/2:6} B:0 2.50102 [ 1.75298] ((1 . 18) (2 . 19) (5 . 21) (7 . 22)) 8.049 {0/3:6} B:0 2.50145 [ 1.75420] ((1 . 18) (3 . 19) (4 . 20) (5 . 21)) 8.773 {0/3:6} B:0 3.57071 [ 3.39519] ((1 . 17) (2 . 18) (3 . 19) (5 . 20)) 7.287 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4987 [and 1/min{score2}: 0.7066] [3434, 3434]: Comparing 1ku1_A and 1ku1_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 10) (11 . 11) (12 . 12)) 0.000 {0/39:45} B:0 2.50039 [ 2.50039] ((1 . 5) (2 . 6) (6 . 11) (7 . 12)) 6.332 {0/5:6} B:0 2.50039 [ 2.50039] ((5 . 1) (6 . 2) (11 . 6) (12 . 7)) 6.332 {0/5:6} B:0 2.50041 [ 2.50041] ((4 . 3) (5 . 4) (10 . 7) (11 . 12)) 6.385 {0/3:6} B:0 2.50041 [ 2.50041] ((3 . 4) (4 . 5) (7 . 10) (12 . 11)) 6.385 {0/3:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [3434, 3540]: Comparing 1ku1_A and 1l5j_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 66 (38 H + 28 S) secondary structure elements in 1l5j_A, of which 10 satisfy the size requirements. 2.00038 [ 2.00038] ((1 . 4) (3 . 5) (4 . 6) (5 . 7) (7 . 9)) 5.307 {0/5:10} B:0 2.11996 [ 2.11996] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (7 . 5)) 6.834 {1/7:10} B:0 2.50008 [ 2.50008] ((3 . 5) (4 . 6) (5 . 7) (7 . 9)) 4.287 {0/3:6} B:0 2.50030 [ 2.50030] ((1 . 1) (3 . 2) (4 . 3) (5 . 4)) 5.925 {0/4:6} B:0 2.50032 [ 2.50032] ((5 . 2) (7 . 4) (10 . 7) (12 . 9)) 6.016 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.4999] [3434, 3599]: Comparing 1ku1_A and 1ld8_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 19 (18 H + 1 S) secondary structure element in 1ld8_A, of which 16 satisfy the size requirements. 2.00078 [ 3.20019] ((1 . 4) (3 . 5) (4 . 6) (5 . 7) (7 . 9)) 6.365 {0/3:10} B:0 2.00099 [ 3.20024] ((1 . 6) (3 . 7) (4 . 8) (5 . 9) (7 . 11)) 6.750 {0/1:10} B:0 2.00131 [ 3.20032] ((2 . 9) (3 . 10) (4 . 11) (6 . 12) (10 . 13)) 7.237 {0/0:10} B:0 2.00240 [ 3.20059] ((2 . 10) (3 . 11) (4 . 12) (10 . 13) (11 . 16)) 8.430 {0/0:10} B:0 2.37864 [ 3.31573] ((1 . 5) (2 . 6) (5 . 8) (7 . 10) (10 . 11)) 5.305 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.5041 [and 1/min{score2}: 0.3618] [3434, 3602]: Comparing 1ku1_A and 1ldj_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 43 (33 H + 10 S) secondary structure elements in 1ldj_A, of which 19 satisfy the size requirements. 1.41529 [ 2.40379] ((1 . 4) (2 . 6) (3 . 8) (4 . 9) (5 . 10) (6 . 12) (7 . 13) (11 . 15)) 7.437 {2/18:28} B:0 1.67058 [ 3.16724] ((1 . 12) (2 . 13) (3 . 14) (5 . 16) (6 . 18) (7 . 19)) 8.308 {0/9:15} B:0 2.38068 [ 3.87142] ((5 . 2) (6 . 3) (7 . 4) (10 . 6) (11 . 10)) 9.462 {1/5:10} B:0 2.50041 [ 4.75006] ((1 . 11) (2 . 12) (5 . 15) (10 . 19)) 6.392 {0/4:6} B:0 2.50072 [ 4.75011] ((1 . 12) (2 . 13) (3 . 14) (4 . 15)) 7.372 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7066 [and 1/min{score2}: 0.4160] [3434, 3711]: Comparing 1ku1_A and 1lrv, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 18 (18 H + 0 S) secondary structure elements in 1lrv, of which 18 satisfy the size requirements. 1.66864 [ 3.00034] ((1 . 4) (3 . 5) (4 . 6) (5 . 7) (10 . 9) (11 . 11)) 6.998 {0/4:15} B:0 1.98280 [ 3.06924] ((1 . 5) (2 . 6) (3 . 8) (4 . 9) (5 . 10) (7 . 11)) 6.341 {1/6:15} B:0 2.00055 [ 3.60009] ((1 . 11) (2 . 12) (3 . 14) (5 . 16) (7 . 18)) 5.830 {0/0:10} B:0 2.00073 [ 3.60013] ((1 . 3) (3 . 6) (4 . 7) (5 . 8) (7 . 9)) 6.255 {0/7:10} B:0 2.00084 [ 3.60014] ((1 . 9) (2 . 10) (3 . 12) (5 . 14) (7 . 15)) 6.476 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6231 [and 1/min{score2}: 0.3836] [3434, 3718]: Comparing 1ku1_A and 1lsh_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 67 (30 H + 37 S) secondary structure elements in 1lsh_A, of which 18 satisfy the size requirements. 2.00070 [ 3.60012] ((1 . 23) (2 . 24) (3 . 25) (4 . 26) (5 . 27)) 6.187 {0/8:10} B:0 2.00097 [ 3.60017] ((1 . 24) (2 . 25) (7 . 29) (10 . 33) (12 . 35)) 6.714 {0/6:10} B:0 2.00123 [ 3.60021] ((1 . 26) (2 . 27) (5 . 29) (6 . 32) (10 . 34)) 7.135 {0/5:10} B:0 2.50004 [ 4.50001] ((1 . 33) (2 . 34) (5 . 37) (7 . 41)) 3.608 {0/4:6} B:0 2.50014 [ 4.50002] ((7 . 23) (10 . 26) (11 . 27) (12 . 28)) 4.883 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6713 [and 1/min{score2}: 0.4343] [3434, 3882]: Comparing 1ku1_A and 1m8z_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 30 (28 H + 2 S) secondary structure elements in 1m8z_A, of which 28 satisfy the size requirements. 1.65675 [ 3.52932] ((1 . 16) (2 . 17) (3 . 18) (4 . 19) (5 . 20) (7 . 23) (10 . 26) (12 . 29)) 6.669 {3/20:28} B:0 1.69949 [ 4.01622] ((3 . 1) (4 . 2) (5 . 3) (7 . 6) (10 . 10) (11 . 11) (12 . 13)) 5.330 {2/14:21} B:0 2.00062 [ 5.60003] ((1 . 22) (2 . 23) (3 . 26) (4 . 27) (5 . 28)) 6.006 {0/6:10} B:0 2.00093 [ 5.60004] ((1 . 4) (2 . 5) (3 . 6) (5 . 8) (10 . 15)) 6.646 {0/7:10} B:0 2.20698 [ 5.61096] ((1 . 19) (2 . 20) (3 . 21) (5 . 23) (7 . 28)) 4.819 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7331 [and 1/min{score2}: 0.3120] [3434, 4123]: Comparing 1ku1_A and 1n4k_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 24 (12 H + 12 S) secondary structure elements in 1n4k_A, of which 8 satisfy the size requirements. 2.00177 [ 1.60345] ((1 . 17) (2 . 18) (4 . 21) (5 . 22) (7 . 23)) 7.807 {0/5:10} B:0 2.20741 [ 1.94449] ((1 . 18) (2 . 20) (3 . 21) (4 . 22) (5 . 23)) 6.469 {1/6:10} B:0 2.20761 [ 1.94479] ((1 . 17) (2 . 18) (3 . 20) (4 . 21) (5 . 22)) 6.938 {1/6:10} B:0 2.50256 [ 2.00499] ((1 . 19) (2 . 20) (4 . 22) (5 . 23)) 10.126 {0/4:6} B:0 2.97322 [ 2.72431] ((2 . 20) (3 . 21) (4 . 22) (5 . 23)) 6.138 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.6244] [3434, 4166]: Comparing 1ku1_A and 1n8v_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1n8v_A, of which 6 satisfy the size requirements. 2.50010 [ 1.50048] ((1 . 2) (3 . 4) (4 . 5) (5 . 6)) 4.538 {0/2:6} B:0 2.50104 [ 1.50478] ((6 . 1) (10 . 4) (11 . 5) (12 . 6)) 8.075 {0/4:6} B:0 2.61603 [ 1.89276] ((2 . 1) (4 . 3) (5 . 4) (7 . 6)) 7.788 {1/6:6} B:0 2.97322 [ 2.57764] ((3 . 3) (4 . 4) (5 . 5) (6 . 6)) 6.072 {1/4:6} B:0 2.97393 [ 2.57874] ((1 . 1) (2 . 2) (3 . 3) (6 . 6)) 8.910 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6665] [3434, 4456]: Comparing 1ku1_A and 1nzn_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1nzn_A, of which 6 satisfy the size requirements. 2.50030 [ 1.50138] ((1 . 2) (2 . 3) (3 . 4) (5 . 5)) 5.917 {0/2:6} B:0 2.50040 [ 1.50187] ((1 . 2) (2 . 3) (5 . 5) (7 . 6)) 6.380 {0/4:6} B:0 5.07642 [ 5.01016] ((1 . 2) (2 . 3) (5 . 5) (6 . 6)) 6.705 {2/4:6} B:0 5.07653 [ 5.01027] ((1 . 3) (2 . 4) (3 . 5) (5 . 6)) 8.729 {1/2:6} B:0 6.04489 [ 6.00603] ((1 . 1) (2 . 2) (4 . 3) (7 . 6)) 10.093 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6661] [3434, 4792]: Comparing 1ku1_A and 1ouv_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 15 (15 H + 0 S) secondary structure elements in 1ouv_A, of which 15 satisfy the size requirements. 2.04897 [ 3.01494] ((1 . 1) (2 . 2) (5 . 4) (10 . 8) (12 . 11)) 9.028 {1/9:10} B:0 2.04904 [ 3.01496] ((1 . 5) (2 . 6) (5 . 8) (10 . 12) (12 . 15)) 9.084 {1/9:10} B:0 2.50025 [ 3.75007] ((1 . 10) (2 . 11) (4 . 12) (5 . 13)) 5.661 {0/4:6} B:0 2.50038 [ 3.75011] ((1 . 7) (4 . 9) (5 . 10) (10 . 14)) 6.281 {0/5:6} B:0 2.50043 [ 3.75013] ((1 . 3) (4 . 5) (5 . 6) (10 . 10)) 6.480 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4881 [and 1/min{score2}: 0.3760] [3434, 4817]: Comparing 1ku1_A and 1oxj_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 13 (13 H + 0 S) secondary structure elements in 1oxj_A, of which 7 satisfy the size requirements. 2.37960 [ 2.11224] ((2 . 5) (3 . 6) (4 . 7) (6 . 9) (10 . 13)) 8.041 {1/5:10} B:0 2.50030 [ 1.75087] ((3 . 6) (4 . 7) (6 . 9) (10 . 13)) 5.908 {0/1:6} B:0 2.50051 [ 1.75149] ((1 . 6) (2 . 7) (3 . 9) (5 . 11)) 6.761 {0/3:6} B:0 2.50181 [ 1.75527] ((1 . 5) (2 . 6) (3 . 7) (7 . 12)) 9.288 {0/4:6} B:0 2.72458 [ 2.24546] ((1 . 7) (2 . 9) (4 . 11) (5 . 12)) 7.315 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4202 [and 1/min{score2}: 0.5711] [3434, 4841]: Comparing 1ku1_A and 1oyz_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 17 (17 H + 0 S) secondary structure elements in 1oyz_A, of which 17 satisfy the size requirements. 1.71957 [ 2.84456] ((1 . 9) (2 . 10) (3 . 12) (4 . 13) (5 . 14) (10 . 16)) 6.506 {1/10:15} B:0 1.78794 [ 2.86045] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (7 . 7) (10 . 8)) 7.970 {1/8:15} B:0 1.85853 [ 2.87857] ((1 . 5) (3 . 6) (4 . 7) (6 . 9) (10 . 11) (12 . 12)) 7.571 {1/7:15} B:0 2.00052 [ 3.40010] ((1 . 11) (2 . 12) (3 . 14) (4 . 15) (5 . 16)) 5.734 {0/7:10} B:0 2.00069 [ 3.40014] ((1 . 8) (3 . 9) (4 . 10) (5 . 11) (7 . 12)) 6.169 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5994 [and 1/min{score2}: 0.3529] [3434, 4952]: Comparing 1ku1_A and 1paq_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1paq_A, of which 10 satisfy the size requirements. 2.07258 [ 2.07258] ((1 . 1) (2 . 5) (3 . 6) (4 . 7) (5 . 8)) 5.144 {1/8:10} B:0 2.45122 [ 2.45122] ((1 . 1) (2 . 5) (3 . 6) (4 . 7) (5 . 8) (7 . 10)) 6.376 {3/13:15} B:0 2.50014 [ 2.50014] ((1 . 5) (3 . 7) (4 . 8) (5 . 9)) 4.927 {0/5:6} B:0 2.50084 [ 2.50084] ((7 . 3) (10 . 5) (11 . 6) (12 . 7)) 7.654 {0/4:6} B:0 2.50090 [ 2.50090] ((3 . 1) (5 . 3) (10 . 7) (12 . 10)) 7.787 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.4999] [3434, 5190]: Comparing 1ku1_A and 1q2z_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1q2z_A, of which 6 satisfy the size requirements. 2.50031 [ 1.50144] ((1 . 2) (2 . 3) (3 . 4) (4 . 5)) 5.974 {0/2:6} B:0 2.72429 [ 2.14280] ((1 . 3) (2 . 4) (3 . 5) (5 . 6)) 6.022 {1/5:6} B:0 3.57060 [ 3.36714] ((1 . 2) (3 . 3) (4 . 4) (5 . 5)) 6.238 {1/3:6} B:0 3.57081 [ 3.36739] ((1 . 1) (3 . 2) (4 . 3) (6 . 5)) 7.928 {1/3:6} B:0 3.57107 [ 3.36771] ((2 . 1) (3 . 2) (5 . 3) (7 . 5)) 9.191 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6660] [3434, 5284]: Comparing 1ku1_A and 1qbk_B, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 52 (52 H + 0 S) secondary structure elements in 1qbk_B, of which 47 satisfy the size requirements. 1.60958 [ 5.88026] ((1 . 25) (3 . 26) (4 . 28) (5 . 29) (7 . 30) (10 . 33) (11 . 34) (12 . 35)) 9.123 {2/14:28} B:0 1.66751 [ 7.83334] ((1 . 23) (2 . 24) (3 . 25) (4 . 26) (5 . 27) (10 . 30)) 5.660 {0/7:15} B:0 1.66797 [ 7.83335] ((1 . 35) (2 . 36) (3 . 37) (4 . 38) (5 . 39) (10 . 45)) 6.304 {0/11:15} B:0 1.71809 [ 5.88272] ((1 . 39) (3 . 41) (4 . 43) (5 . 44) (7 . 46) (10 . 50) (11 . 51) (12 . 52)) 7.803 {3/19:28} B:0 2.00073 [ 9.40001] ((1 . 42) (3 . 44) (4 . 45) (7 . 49) (10 . 52)) 6.250 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.6233 [and 1/min{score2}: 0.2099] [3434, 5285]: Comparing 1ku1_A and 1qc7_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1qc7_A, of which 6 satisfy the size requirements. 2.11924 [ 1.58079] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5)) 4.432 {1/7:10} B:0 2.97311 [ 2.57748] ((3 . 2) (4 . 3) (5 . 4) (6 . 5)) 5.047 {1/4:6} B:0 5.07678 [ 5.01053] ((1 . 2) (3 . 4) (4 . 5) (5 . 6)) 10.977 {2/4:6} B:0 6.04475 [ 6.00589] ((4 . 1) (5 . 2) (6 . 3) (7 . 5)) 7.021 {3/5:6} B:0 7.52305 [ 7.50301] ((2 . 1) (3 . 3) (4 . 4) (5 . 5)) 5.810 {3/4:6} B:0 SIMILARITY (1/min{score1}): 0.4719 [and 1/min{score2}: 0.6665] [3434, 5326]: Comparing 1ku1_A and 1qgr_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 52 (52 H + 0 S) secondary structure elements in 1qgr_A, of which 49 satisfy the size requirements. 1.36516 [ 6.12612] ((1 . 9) (2 . 10) (3 . 14) (4 . 15) (5 . 17) (6 . 18) (10 . 21) (11 . 24)) 6.760 {2/20:28} B:0 1.43116 [ 7.00002] ((1 . 9) (2 . 10) (3 . 14) (4 . 15) (5 . 17) (10 . 21) (11 . 24)) 6.674 {0/15:21} B:0 1.70102 [ 7.00306] ((3 . 22) (4 . 23) (5 . 24) (7 . 27) (10 . 30) (11 . 31) (12 . 32)) 7.259 {1/7:21} B:0 1.70288 [ 7.00309] ((1 . 33) (3 . 34) (4 . 36) (5 . 37) (7 . 39) (10 . 43) (12 . 46)) 8.484 {2/14:21} B:0 1.72049 [ 8.16715] ((1 . 19) (2 . 20) (3 . 21) (4 . 22) (5 . 23) (10 . 29)) 7.409 {1/10:15} B:0 SIMILARITY (1/min{score1}): 0.7325 [and 1/min{score2}: 0.1819] [3434, 5354]: Comparing 1ku1_A and 1qjb_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1qjb_A, of which 9 satisfy the size requirements. 2.50009 [ 2.25012] ((3 . 1) (4 . 2) (10 . 5) (12 . 7)) 4.360 {0/3:6} B:0 2.50048 [ 2.25066] ((1 . 6) (2 . 7) (4 . 8) (5 . 10)) 6.671 {0/2:6} B:0 2.50085 [ 2.25116] ((1 . 4) (2 . 5) (4 . 6) (5 . 7)) 7.677 {0/3:6} B:0 2.50086 [ 2.25118] ((1 . 6) (2 . 7) (3 . 8) (5 . 10)) 7.701 {0/2:6} B:0 2.50108 [ 2.25148] ((1 . 5) (3 . 6) (4 . 7) (5 . 8)) 8.154 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.5976 [and 1/min{score2}: 0.6626] [3434, 5417]: Comparing 1ku1_A and 1qqe_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 15 (15 H + 0 S) secondary structure elements in 1qqe_A, of which 15 satisfy the size requirements. 2.00108 [ 3.00032] ((1 . 5) (2 . 6) (3 . 7) (5 . 8) (11 . 13)) 6.907 {0/5:10} B:0 2.00196 [ 3.00058] ((1 . 6) (3 . 7) (4 . 8) (10 . 13) (12 . 15)) 8.010 {0/6:10} B:0 2.50035 [ 3.75010] ((1 . 3) (2 . 4) (5 . 6) (11 . 11)) 6.133 {0/4:6} B:0 2.50037 [ 3.75011] ((3 . 9) (4 . 10) (7 . 12) (10 . 13)) 6.221 {0/0:6} B:0 2.50037 [ 3.75011] ((2 . 3) (5 . 5) (10 . 9) (11 . 10)) 6.240 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6977 [and 1/min{score2}: 0.5092] [3434, 5441]: Comparing 1ku1_A and 1qsa_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 40 (40 H + 0 S) secondary structure elements in 1qsa_A, of which 27 satisfy the size requirements. 1.66737 [ 4.50004] ((1 . 4) (3 . 5) (4 . 6) (5 . 7) (7 . 8) (10 . 9)) 5.412 {0/7:15} B:0 2.00036 [ 5.40002] ((3 . 9) (4 . 10) (10 . 15) (11 . 16) (12 . 17)) 5.258 {0/2:10} B:0 2.00123 [ 5.40006] ((1 . 6) (2 . 7) (6 . 11) (10 . 15) (11 . 16)) 7.124 {0/6:10} B:0 2.00127 [ 5.40006] ((1 . 16) (2 . 17) (4 . 18) (5 . 19) (7 . 20)) 7.181 {0/7:10} B:0 2.11940 [ 5.40662] ((1 . 17) (3 . 18) (4 . 19) (5 . 20) (10 . 23)) 5.271 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.5997 [and 1/min{score2}: 0.2903] [3434, 5595]: Comparing 1ku1_A and 1r8s_E, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1r8s_E, of which 10 satisfy the size requirements. 1.01691 [ 1.01691] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 8) (11 . 9) (12 . 10)) 1.962 {2/39:45} B:0 2.04946 [ 2.04946] ((1 . 2) (3 . 4) (6 . 7) (7 . 8) (10 . 9)) 9.384 {1/9:10} B:0 2.29048 [ 2.29048] ((2 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 8) (11 . 9) (12 . 10)) 3.054 {7/31:36} B:0 2.35585 [ 2.35585] ((2 . 1) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (10 . 8) (11 . 9) (12 . 10)) 3.010 {6/26:28} B:0 2.50032 [ 2.50032] ((3 . 2) (10 . 8) (11 . 9) (12 . 10)) 6.006 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9834 [and 1/min{score2}: 0.9834] [3434, 6033]: Comparing 1ku1_A and 1ujk_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1ujk_A, of which 8 satisfy the size requirements. 2.00088 [ 1.60172] ((1 . 4) (2 . 5) (4 . 7) (5 . 9) (7 . 10)) 6.553 {0/5:10} B:0 2.20698 [ 1.94387] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (7 . 10)) 4.848 {1/6:10} B:0 2.50006 [ 2.00012] ((3 . 2) (4 . 3) (5 . 4) (7 . 6)) 3.956 {0/5:6} B:0 2.50008 [ 2.00016] ((1 . 4) (2 . 5) (4 . 7) (5 . 9)) 4.274 {0/3:6} B:0 2.50018 [ 2.00036] ((1 . 5) (3 . 7) (4 . 9) (5 . 10)) 5.242 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.6243] [3434, 6077]: Comparing 1ku1_A and 1upk_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 20 (20 H + 0 S) secondary structure elements in 1upk_A, of which 20 satisfy the size requirements. 2.00056 [ 4.00007] ((1 . 8) (2 . 10) (4 . 12) (5 . 13) (7 . 15)) 5.860 {0/7:10} B:0 2.00065 [ 4.00008] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6)) 6.080 {0/7:10} B:0 2.11945 [ 4.01622] ((1 . 11) (2 . 13) (4 . 15) (5 . 16) (7 . 18)) 5.466 {1/7:10} B:0 2.11983 [ 4.01628] ((1 . 14) (2 . 15) (3 . 16) (4 . 17) (5 . 18)) 6.555 {1/7:10} B:0 2.20773 [ 3.43670] ((1 . 11) (3 . 13) (4 . 14) (5 . 15) (7 . 17) (10 . 19)) 7.172 {2/10:15} B:0 SIMILARITY (1/min{score1}): 0.6037 [and 1/min{score2}: 0.3879] [3434, 6128]: Comparing 1ku1_A and 1uw4_B, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 12 (12 H + 0 S) secondary structure elements in 1uw4_B, of which 11 satisfy the size requirements. 1.67305 [ 1.83814] ((1 . 6) (3 . 7) (4 . 8) (6 . 9) (7 . 10) (10 . 11)) 9.394 {0/3:15} B:0 1.70459 [ 1.86213] ((1 . 1) (3 . 3) (4 . 5) (5 . 6) (7 . 8) (11 . 12)) 7.310 {1/11:15} B:0 2.20771 [ 2.36306] ((1 . 6) (3 . 7) (5 . 9) (7 . 11) (10 . 12)) 7.144 {1/6:10} B:0 2.37901 [ 2.50630] ((1 . 6) (4 . 8) (5 . 9) (7 . 10) (10 . 12)) 6.780 {1/5:10} B:0 2.50016 [ 2.75012] ((3 . 2) (4 . 3) (5 . 5) (7 . 7)) 5.094 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5977 [and 1/min{score2}: 0.5440] [3434, 6176]: Comparing 1ku1_A and 1v54_E, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1v54_E, of which 6 satisfy the size requirements. 2.00103 [ 1.20475] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6)) 6.821 {0/3:10} B:0 2.50066 [ 1.50303] ((3 . 1) (4 . 2) (6 . 4) (7 . 5)) 7.204 {0/3:6} B:0 2.50073 [ 1.50339] ((1 . 2) (2 . 3) (3 . 4) (5 . 6)) 7.405 {0/0:6} B:0 2.50077 [ 1.50357] ((3 . 1) (4 . 2) (5 . 3) (7 . 5)) 7.503 {0/3:6} B:0 3.57070 [ 3.36726] ((7 . 1) (10 . 3) (11 . 4) (12 . 5)) 7.181 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4997 [and 1/min{score2}: 0.8300] [3434, 6212]: Comparing 1ku1_A and 1vdu_A, based on their crossing files. There are 12 (12 H + 0 S) secondary structure elements in 1ku1_A, of which 10 satisfy the size requirements. There are 11 (11 H + 0 S) secondary structure elements in 1vdu_A, of which 10 satisfy the size requirements. 2.00137 [ 2.00137] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (10 . 11)) 7.329 {0/8:10} B:0 2.50018 [ 2.50018] ((4 . 1) (5 . 2) (7 . 4) (10 . 7)) 5.198 {0/4:6} B:0 2.50023 [ 2.50023] ((3 . 2) (4 . 3) (5 . 4) (10 . 9)) 5.547 {0/2:6} B:0 2.50066 [ 2.50066] ((1 . 2) (2 . 3) (5 . 6) (7 . 9)) 7.199 {0/3:6} B:0 2.50090 [ 2.50090] ((1 . 3) (2 . 4) (5 . 7) (6 . 9)) 7.791 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6216 [and 1/min{score2}: 0.6216] -------------------------------------------------------------------------------------------------------------------------