------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6176 1v54_E) ( 16 1a17 ) 0.8324 0.7138 5.0125 ( 0 0 10) 0 0.8324 0.7138 6 7 ( 6176 1v54_E) ( 287 1b3u_A) 0.9990 0.1395 3.9927 ( 0 4 15) 0 0.9990 0.1395 6 43 ( 6176 1v54_E) ( 314 1b89_A) 0.8330 0.2273 3.8591 ( 0 0 10) 0 0.8330 0.2670 6 22 ( 6176 1v54_E) ( 444 1bpo_A) 0.6666 0.4000 3.7134 ( 0 0 6) 0 0.6666 0.4000 6 10 ( 6176 1v54_E) ( 789 1dce_A) 0.8319 0.3333 5.5719 ( 0 4 10) 0 0.8319 0.3668 6 15 ( 6176 1v54_E) ( 954 1dvp_A) 0.8327 0.6248 4.5694 ( 0 0 10) 0 0.8327 0.6248 6 8 ( 6176 1v54_E) ( 1069 1e7u_A) 0.8330 0.4167 3.9032 ( 0 2 10) 0 0.8330 0.4204 6 12 ( 6176 1v54_E) ( 1118 1ee4_A) 0.9965 0.2143 5.5306 ( 0 5 15) 0 0.9965 0.2143 6 28 ( 6176 1v54_E) ( 1205 1elk_A) 0.8324 0.5554 4.9833 ( 0 0 10) 0 0.9788 0.6638 6 9 ( 6176 1v54_E) ( 1206 1elr_A) 0.8326 0.7140 4.6530 ( 0 0 10) 0 0.8326 0.7140 6 7 ( 6176 1v54_E) ( 1210 1elw_A) 0.8328 0.7140 4.3459 ( 0 0 10) 0 0.8328 0.7140 6 7 ( 6176 1v54_E) ( 1315 1eyh_A) 0.8311 0.6245 6.1955 ( 0 4 10) 0 0.8311 0.6245 6 8 ( 6176 1v54_E) ( 1470 1fch_A) 0.8326 0.2941 4.7490 ( 0 0 10) 0 0.8326 0.2941 6 17 ( 6176 1v54_E) ( 1983 1gw5_A) 0.9929 0.1875 6.5977 ( 0 4 15) 0 0.9929 0.1875 6 32 ( 6176 1v54_E) ( 1984 1gw5_B) 0.8328 0.1562 4.3408 ( 0 0 10) 0 0.9749 0.1875 6 32 ( 6176 1v54_E) ( 2101 1h6k_A) 0.8322 0.3846 5.2410 ( 0 0 10) 0 0.9814 0.4611 6 13 ( 6176 1v54_E) ( 2102 1h6k_A) 0.8321 0.4999 5.3798 ( 0 4 10) 0 0.8321 0.4999 6 10 ( 6176 1v54_E) ( 2103 1h6k_A) 0.9981 0.4000 4.7051 ( 0 5 15) 0 0.9981 0.4000 6 15 ( 6176 1v54_E) ( 2197 1hf8_A) 0.6661 0.6661 5.6951 ( 0 3 6) 0 0.8194 0.8194 6 6 ( 6176 1v54_E) ( 2213 1hh8_A) 0.8324 0.4166 4.9500 ( 0 0 10) 0 0.8324 0.4166 6 12 ( 6176 1v54_E) ( 2252 1ho8_A) 0.9983 0.2222 4.5683 ( 0 5 15) 0 0.9983 0.2222 6 27 ( 6176 1v54_E) ( 2276 1hs6_A) 0.8328 0.5000 4.4017 ( 0 1 10) 0 0.8328 0.5000 6 10 ( 6176 1v54_E) ( 2292 1hu3_A) 0.9681 0.5973 9.7615 ( 0 1 15) 0 0.9749 0.5979 6 10 ( 6176 1v54_E) ( 2342 1hz4_A) 0.8325 0.2778 4.7633 ( 0 0 10) 0 0.9714 0.3332 6 18 ( 6176 1v54_E) ( 2493 1ihg_A) 0.8302 0.7128 6.7163 ( 0 0 10) 0 0.8302 0.7128 6 7 ( 6176 1v54_E) ( 2698 1j1j_A) 0.8207 0.5538 9.6185 ( 0 0 10) 0 0.8207 0.5538 6 9 ( 6176 1v54_E) ( 2829 1jdh_A) 0.9968 0.1765 5.3712 ( 0 5 15) 0 0.9968 0.1765 6 34 ( 6176 1v54_E) ( 3216 1k8k_G) 0.6663 0.5713 5.0562 ( 0 3 6) 0 0.6663 0.5713 6 7 ( 6176 1v54_E) ( 3353 1klx_A) 0.6666 0.5000 3.6907 ( 0 0 6) 0 0.6666 0.5000 6 8 ( 6176 1v54_E) ( 3392 1kps_B) 0.8305 0.5552 6.5895 ( 0 0 10) 0 0.8305 0.5552 6 9 ( 6176 1v54_E) ( 3424 1kt1_A) 0.8302 0.7128 6.7297 ( 0 0 10) 0 0.8302 0.7128 6 7 ( 6176 1v54_E) ( 3434 1ku1_A) 0.8300 0.4997 6.8209 ( 0 3 10) 0 0.8300 0.4997 6 10 ( 6176 1v54_E) ( 3540 1l5j_A) 0.8316 0.4999 5.7759 ( 0 0 10) 0 0.8319 0.4999 6 10 ( 6176 1v54_E) ( 3599 1ld8_A) 0.8324 0.3125 4.9703 ( 0 0 10) 0 0.8324 0.3250 6 16 ( 6176 1v54_E) ( 3602 1ldj_A) 0.8293 0.2631 7.1642 ( 0 3 10) 0 0.8293 0.2631 6 19 ( 6176 1v54_E) ( 3711 1lrv ) 0.8325 0.2778 4.7680 ( 0 0 10) 0 0.8325 0.2778 6 18 ( 6176 1v54_E) ( 3718 1lsh_A) 0.9914 0.3333 6.9373 ( 0 1 15) 0 0.9914 0.3333 6 18 ( 6176 1v54_E) ( 3882 1m8z_A) 0.9974 0.2143 5.1398 ( 0 5 15) 0 0.9974 0.2143 6 28 ( 6176 1v54_E) ( 4123 1n4k_A) 0.6645 0.4995 8.1175 ( 0 0 6) 0 0.6645 0.4995 6 8 ( 6176 1v54_E) ( 4166 1n8v_A) 0.6663 0.6663 5.1460 ( 0 1 6) 0 0.6663 0.6663 6 6 ( 6176 1v54_E) ( 4456 1nzn_A) 0.8321 0.8321 5.3445 ( 0 0 10) 0 0.8321 0.8321 6 6 ( 6176 1v54_E) ( 4792 1ouv_A) 0.6665 0.2667 4.1869 ( 0 0 6) 0 0.6665 0.2667 6 15 ( 6176 1v54_E) ( 4817 1oxj_A) 0.6665 0.5714 3.9362 ( 0 0 6) 0 0.8216 0.7087 6 7 ( 6176 1v54_E) ( 4841 1oyz_A) 0.8326 0.2941 4.6001 ( 0 0 10) 0 0.9910 0.3529 6 17 ( 6176 1v54_E) ( 4952 1paq_A) 0.8315 0.4999 5.8560 ( 0 4 10) 0 0.8315 0.4999 6 10 ( 6176 1v54_E) ( 5190 1q2z_A) 0.6662 0.6662 5.4133 ( 0 0 6) 0 0.8276 0.8276 6 6 ( 6176 1v54_E) ( 5284 1qbk_B) 0.9982 0.1277 4.6500 ( 0 5 15) 0 0.9982 0.1277 6 47 ( 6176 1v54_E) ( 5285 1qc7_A) 0.6665 0.6665 4.4883 ( 0 0 6) 0 0.6665 0.6665 6 6 ( 6176 1v54_E) ( 5326 1qgr_A) 0.9909 0.1224 7.0378 ( 0 0 15) 0 0.9961 0.1224 6 49 ( 6176 1v54_E) ( 5354 1qjb_A) 0.8299 0.5551 6.9196 ( 0 0 10) 0 0.8299 0.5551 6 9 ( 6176 1v54_E) ( 5417 1qqe_A) 0.8316 0.3333 5.8065 ( 0 0 10) 0 0.8316 0.3333 6 15 ( 6176 1v54_E) ( 5441 1qsa_A) 0.8319 0.1852 5.5407 ( 0 0 10) 0 0.9929 0.2222 6 27 ( 6176 1v54_E) ( 5595 1r8s_E) 0.6661 0.4000 5.8512 ( 0 2 6) 0 0.6661 0.4000 6 10 ( 6176 1v54_E) ( 6033 1ujk_A) 0.8327 0.6249 4.4405 ( 0 0 10) 0 0.8327 0.6249 6 8 ( 6176 1v54_E) ( 6077 1upk_A) 0.8330 0.2500 3.8340 ( 0 4 10) 0 0.8330 0.2910 6 20 ( 6176 1v54_E) ( 6128 1uw4_B) 0.8322 0.4545 5.2350 ( 0 0 10) 0 0.9782 0.5443 6 11 ( 6176 1v54_E) ( 6176 1v54_E) 1.0000 1.0000 0.0000 ( 0 5 15) 0 1.0000 1.0000 6 6 ( 6176 1v54_E) ( 6212 1vdu_A) 0.8326 0.4999 4.7455 ( 0 0 10) 0 0.8326 0.4999 6 10 -------------------------------------------------------------------------------------------------------------------------