------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6212 1vdu_A) ( 16 1a17 ) 0.6462 0.7898 7.3895 ( 1 9 21) 0 0.6972 0.9840 10 7 ( 6212 1vdu_A) ( 287 1b3u_A) 0.6993 0.1628 5.8511 ( 0 7 21) 0 0.9951 0.2326 10 43 ( 6212 1vdu_A) ( 314 1b89_A) 0.9951 0.4544 6.0049 ( 0 14 45) 0 0.9951 0.4544 10 22 ( 6212 1vdu_A) ( 444 1bpo_A) 0.5999 0.5999 4.5404 ( 0 5 15) 0 0.7965 0.7965 10 10 ( 6212 1vdu_A) ( 789 1dce_A) 0.6998 0.4666 4.0958 ( 0 4 21) 0 0.6998 0.4666 10 15 ( 6212 1vdu_A) ( 954 1dvp_A) 0.5997 0.7492 5.4703 ( 0 2 15) 0 0.6231 0.7492 10 8 ( 6212 1vdu_A) ( 1069 1e7u_A) 0.7990 0.6663 5.2841 ( 0 15 28) 0 0.7990 0.6663 10 12 ( 6212 1vdu_A) ( 1118 1ee4_A) 0.9835 0.3570 6.4244 ( 1 22 45) 0 0.9835 0.3570 10 28 ( 6212 1vdu_A) ( 1205 1elk_A) 0.5994 0.6657 6.6374 ( 0 2 15) 0 0.5994 0.6657 10 9 ( 6212 1vdu_A) ( 1206 1elr_A) 0.5996 0.8550 5.9162 ( 0 1 15) 0 0.6234 0.8550 10 7 ( 6212 1vdu_A) ( 1210 1elw_A) 0.6991 0.9949 6.0565 ( 0 6 21) 0 0.6997 0.9980 10 7 ( 6212 1vdu_A) ( 1315 1eyh_A) 0.5045 0.5506 4.5916 ( 1 6 15) 0 0.5045 0.6243 10 8 ( 6212 1vdu_A) ( 1470 1fch_A) 0.5987 0.3529 8.1278 ( 0 9 15) 0 0.7637 0.4678 10 17 ( 6212 1vdu_A) ( 1983 1gw5_A) 0.9845 0.3125 5.3982 ( 1 21 45) 0 0.9845 0.3125 10 32 ( 6212 1vdu_A) ( 1984 1gw5_B) 0.9941 0.3125 6.2870 ( 0 25 45) 0 0.9941 0.3125 10 32 ( 6212 1vdu_A) ( 2101 1h6k_A) 0.5994 0.4614 6.7329 ( 0 8 15) 0 0.6719 0.5304 10 13 ( 6212 1vdu_A) ( 2102 1h6k_A) 0.6990 0.6990 6.2871 ( 0 9 21) 0 0.6990 0.6990 10 10 ( 6212 1vdu_A) ( 2103 1h6k_A) 0.8658 0.5951 9.0671 ( 1 16 36) 0 0.8658 0.6354 10 15 ( 6212 1vdu_A) ( 2197 1hf8_A) 0.4999 0.8319 5.5275 ( 0 3 10) 0 0.4999 0.8319 10 6 ( 6212 1vdu_A) ( 2213 1hh8_A) 0.6993 0.5831 5.7341 ( 0 8 21) 0 0.6997 0.5832 10 12 ( 6212 1vdu_A) ( 2252 1ho8_A) 0.7716 0.2961 6.6087 ( 1 13 28) 0 0.9894 0.3703 10 27 ( 6212 1vdu_A) ( 2276 1hs6_A) 0.6989 0.6989 6.3843 ( 0 8 21) 0 0.6989 0.6989 10 10 ( 6212 1vdu_A) ( 2292 1hu3_A) 0.7968 0.7968 7.1362 ( 0 12 28) 0 0.7968 0.7968 10 10 ( 6212 1vdu_A) ( 2342 1hz4_A) 0.6993 0.3889 5.7930 ( 0 5 21) 0 0.6994 0.3889 10 18 ( 6212 1vdu_A) ( 2493 1ihg_A) 0.5384 0.5817 5.8435 ( 1 6 21) 0 0.6986 0.9915 10 7 ( 6212 1vdu_A) ( 2698 1j1j_A) 0.3999 0.4442 7.6157 ( 0 1 6) 0 0.4956 0.5482 10 9 ( 6212 1vdu_A) ( 2829 1jdh_A) 0.9873 0.2941 6.1746 ( 1 24 45) 0 0.9873 0.2941 10 34 ( 6212 1vdu_A) ( 3216 1k8k_G) 0.5045 0.5685 4.7713 ( 1 6 15) 0 0.5045 0.5713 10 7 ( 6212 1vdu_A) ( 3353 1klx_A) 0.5000 0.6249 3.8470 ( 0 6 10) 0 0.6986 0.8708 10 8 ( 6212 1vdu_A) ( 3392 1kps_B) 0.7720 0.8435 6.2930 ( 1 13 28) 0 0.7720 0.8435 10 9 ( 6212 1vdu_A) ( 3424 1kt1_A) 0.4998 0.7134 5.9626 ( 0 1 10) 0 0.5858 0.7134 10 7 ( 6212 1vdu_A) ( 3434 1ku1_A) 0.4997 0.4997 7.3293 ( 0 8 10) 0 0.6216 0.6216 10 10 ( 6212 1vdu_A) ( 3540 1l5j_A) 0.6993 0.6993 5.7509 ( 0 10 21) 0 0.7053 0.7053 10 10 ( 6212 1vdu_A) ( 3599 1ld8_A) 0.6999 0.4375 3.6802 ( 0 6 21) 0 0.7294 0.4918 10 16 ( 6212 1vdu_A) ( 3602 1ldj_A) 0.6227 0.3643 7.3460 ( 1 8 21) 0 0.7307 0.4176 10 19 ( 6212 1vdu_A) ( 3711 1lrv ) 0.9513 0.5527 6.2490 ( 1 15 45) 0 0.9513 0.5527 10 18 ( 6212 1vdu_A) ( 3718 1lsh_A) 0.7986 0.4444 5.7635 ( 0 3 28) 0 0.8386 0.4962 10 18 ( 6212 1vdu_A) ( 3882 1m8z_A) 0.8746 0.3561 6.4219 ( 2 22 45) 0 0.9849 0.3571 10 28 ( 6212 1vdu_A) ( 4123 1n4k_A) 0.4998 0.6245 6.0845 ( 0 4 10) 0 0.5069 0.6245 10 8 ( 6212 1vdu_A) ( 4166 1n8v_A) nil ( 6212 1vdu_A) ( 4456 1nzn_A) 0.4999 0.8324 4.9497 ( 0 3 10) 0 0.5373 0.8324 10 6 ( 6212 1vdu_A) ( 4792 1ouv_A) 0.6233 0.4540 6.0865 ( 1 8 21) 0 0.7219 0.5207 10 15 ( 6212 1vdu_A) ( 4817 1oxj_A) 0.4000 0.5712 5.8021 ( 0 1 6) 0 0.4998 0.7129 10 7 ( 6212 1vdu_A) ( 4841 1oyz_A) 0.9880 0.5874 5.9665 ( 1 24 45) 0 0.9880 0.5874 10 17 ( 6212 1vdu_A) ( 4952 1paq_A) 0.4999 0.4999 5.7973 ( 0 4 10) 0 0.7908 0.7908 10 10 ( 6212 1vdu_A) ( 5190 1q2z_A) 0.4999 0.8318 5.6673 ( 0 2 10) 0 0.4999 0.8318 10 6 ( 6212 1vdu_A) ( 5284 1qbk_B) 0.9711 0.2128 7.9764 ( 1 20 45) 0 0.9763 0.2128 10 47 ( 6212 1vdu_A) ( 5285 1qc7_A) 0.4000 0.6664 4.8062 ( 0 3 6) 0 0.4000 0.6664 10 6 ( 6212 1vdu_A) ( 5326 1qgr_A) 0.9786 0.2041 7.9227 ( 1 24 45) 0 0.9786 0.2041 10 49 ( 6212 1vdu_A) ( 5354 1qjb_A) 0.4997 0.5551 6.9748 ( 0 3 10) 0 0.6977 0.7739 10 9 ( 6212 1vdu_A) ( 5417 1qqe_A) 0.8908 0.5988 8.0446 ( 0 16 36) 0 0.8961 0.5995 10 15 ( 6212 1vdu_A) ( 5441 1qsa_A) 0.6987 0.2593 6.6587 ( 0 10 21) 0 0.8522 0.3330 10 27 ( 6212 1vdu_A) ( 5595 1r8s_E) 0.5817 0.5817 5.7867 ( 1 10 15) 0 0.5817 0.5817 10 10 ( 6212 1vdu_A) ( 6033 1ujk_A) 0.5383 0.6073 6.3660 ( 1 7 15) 0 0.5383 0.6249 10 8 ( 6212 1vdu_A) ( 6077 1upk_A) 0.9869 0.4996 5.9006 ( 1 23 45) 0 0.9869 0.4996 10 20 ( 6212 1vdu_A) ( 6128 1uw4_B) 0.7951 0.7242 7.9331 ( 0 11 28) 0 0.8802 0.8057 10 11 ( 6212 1vdu_A) ( 6176 1v54_E) 0.4999 0.8326 4.7455 ( 0 0 10) 0 0.4999 0.8326 10 6 ( 6212 1vdu_A) ( 6212 1vdu_A) 1.0000 1.0000 0.0000 ( 0 28 45) 0 1.0000 1.0000 10 10 -------------------------------------------------------------------------------------------------------------------------