------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4120 1n45_A) ( 2634 1iw0_A) 0.9091 0.9999 1.5596 ( 0 26 45) 0 0.9091 0.9999 11 10 ( 4120 1n45_A) ( 2753 1j77_A) 0.6351 0.6980 7.4517 ( 0 11 21) 0 0.7258 0.7977 11 10 ( 4120 1n45_A) ( 4120 1n45_A) 1.0000 1.0000 0.0000 ( 0 35 55) 0 1.0000 1.0000 11 11 ( 4120 1n45_A) ( 4786 1otv_A) 0.7286 0.7286 5.1343 ( 3 25 45) 0 0.8057 0.8057 11 11 ( 4120 1n45_A) ( 5207 1q4m_A) 0.7261 0.6659 6.2303 ( 0 12 28) 0 0.7261 0.6659 11 12 ( 4120 1n45_A) ( 5608 1rcw_A) 0.9971 0.9971 5.2818 ( 0 25 55) 0 0.9971 0.9971 11 11 ( 4120 1n45_A) ( 5704 1rtw_A) 0.7979 0.8682 7.0670 ( 1 15 36) 0 0.7979 0.8682 11 10 -------------------------------------------------------------------------------------------------------------------------