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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4120 1n45_A)  ( 2634 1iw0_A)     0.9091   0.9999   1.5596 (   0   26   45)   0     0.9091   0.9999   11  10
( 4120 1n45_A)  ( 2753 1j77_A)     0.6351   0.6980   7.4517 (   0   11   21)   0     0.7258   0.7977   11  10
( 4120 1n45_A)  ( 4120 1n45_A)     1.0000   1.0000   0.0000 (   0   35   55)   0     1.0000   1.0000   11  11
( 4120 1n45_A)  ( 4786 1otv_A)     0.7286   0.7286   5.1343 (   3   25   45)   0     0.8057   0.8057   11  11
( 4120 1n45_A)  ( 5207 1q4m_A)     0.7261   0.6659   6.2303 (   0   12   28)   0     0.7261   0.6659   11  12
( 4120 1n45_A)  ( 5608 1rcw_A)     0.9971   0.9971   5.2818 (   0   25   55)   0     0.9971   0.9971   11  11
( 4120 1n45_A)  ( 5704 1rtw_A)     0.7979   0.8682   7.0670 (   1   15   36)   0     0.7979   0.8682   11  10

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