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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5207 1q4m_A)  ( 2634 1iw0_A)     0.6660   0.7983   6.0878 (   0   12   28)   0     0.6660   0.7983   12  10
( 5207 1q4m_A)  ( 2753 1j77_A)     0.3774   0.4200   9.4626 (   1    5   10)   0     0.4972   0.5105   12  10
( 5207 1q4m_A)  ( 4120 1n45_A)     0.6659   0.7261   6.2303 (   0   12   28)   0     0.6959   0.7399   12  11
( 5207 1q4m_A)  ( 4786 1otv_A)     0.6543   0.7085   7.3521 (   1   13   28)   0     0.6543   0.7085   12  11
( 5207 1q4m_A)  ( 5207 1q4m_A)     1.0000   1.0000   0.0000 (   0   42   66)   0     1.0000   1.0000   12  12
( 5207 1q4m_A)  ( 5608 1rcw_A)     0.6659   0.7260   6.3147 (   0    9   28)   0     0.6659   0.7260   12  11
( 5207 1q4m_A)  ( 5704 1rtw_A)     0.7475   0.8937   2.3454 (   1   22   36)   0     0.7475   0.8937   12  10

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