------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4077 1mxr_A) ( 119 1afr_A) 0.5169 0.5169 7.5582 ( 2 19 36) 0 0.5577 0.5577 17 17 ( 4077 1mxr_A) ( 2032 1h0o_A) 0.7055 0.9217 3.5542 ( 1 36 66) 0 0.7055 0.9217 17 13 ( 4077 1mxr_A) ( 2948 1jkv_A) 0.2941 0.3846 6.3146 ( 0 1 10) 0 0.3519 0.4578 17 13 ( 4077 1mxr_A) ( 3294 1kgn_A) 0.7538 0.9010 4.5531 ( 3 47 78) 0 0.7538 0.9010 17 14 ( 4077 1mxr_A) ( 3587 1lb3_A) 0.2352 0.6537 12.8259 ( 0 0 6) 0 0.3528 0.9787 17 6 ( 4077 1mxr_A) ( 4030 1mty_B) 0.3248 0.3238 7.9185 ( 7 23 66) 0 0.4482 0.4272 17 18 ( 4077 1mxr_A) ( 4031 1mty_D) 0.2941 0.2083 5.4975 ( 0 4 10) 0 0.6222 0.4812 17 24 ( 4077 1mxr_A) ( 4077 1mxr_A) 1.0000 1.0000 0.0000 ( 0 106 136) 0 1.0000 1.0000 17 17 ( 4077 1mxr_A) ( 4270 1nig_A) 0.2352 0.4975 12.1081 ( 0 3 6) 0 0.3430 0.5500 17 8 ( 4077 1mxr_A) ( 4783 1otk_A) 0.3529 0.6659 6.2114 ( 0 5 15) 0 0.3916 0.6659 17 9 ( 4077 1mxr_A) ( 6297 1vjx_A) 0.2171 0.2970 8.2607 ( 1 3 6) 0 0.2352 0.6543 17 6 -------------------------------------------------------------------------------------------------------------------------