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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4783 1otk_A)  (  119 1afr_A)     0.8613   0.4694   5.8102 (   1   15   28)   0     0.8613   0.4694    9  17
( 4783 1otk_A)  ( 2032 1h0o_A)     0.8715   0.6125   5.2897 (   1   17   28)   0     0.8865   0.6150    9  13
( 4783 1otk_A)  ( 2948 1jkv_A)     0.5539   0.3844   9.5228 (   0    2   10)   0     0.5539   0.3844    9  13
( 4783 1otk_A)  ( 3294 1kgn_A)     0.6656   0.4285   6.8450 (   0    4   15)   0     0.7750   0.4997    9  14
( 4783 1otk_A)  ( 3587 1lb3_A)     0.4444   0.6664   4.8835 (   0    1    6)   0     0.4444   0.6664    9   6
( 4783 1otk_A)  ( 4030 1mty_B)     0.7765   0.3888   5.8658 (   0    7   21)   0     0.7765   0.3888    9  18
( 4783 1otk_A)  ( 4031 1mty_D)     0.7754   0.2916   6.8266 (   0   12   21)   0     0.7754   0.3301    9  24
( 4783 1otk_A)  ( 4077 1mxr_A)     0.6659   0.3529   6.2114 (   0    5   15)   0     0.6659   0.3916    9  17
( 4783 1otk_A)  ( 4270 1nig_A)     0.4444   0.4999   5.5551 (   0    0    6)   0     0.4444   0.4999    9   8
( 4783 1otk_A)  ( 4783 1otk_A)     1.0000   1.0000   0.0000 (   0   28   36)   0     1.0000   1.0000    9   9
( 4783 1otk_A)  ( 6297 1vjx_A)     0.4444   0.6666   3.3462 (   0    1    6)   0     0.4444   0.6666    9   6

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