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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6297 1vjx_A)  (  119 1afr_A)     0.6663   0.2353   5.2464 (   0    1    6)   0     0.8308   0.2941    6  17
( 6297 1vjx_A)  ( 2032 1h0o_A)     0.8318   0.3846   5.5976 (   0    3   10)   0     0.8318   0.4495    6  13
( 6297 1vjx_A)  ( 2948 1jkv_A)     0.1996   0.1919  13.7199 (   1    2    6)   0     0.6647   0.3077    6  13
( 6297 1vjx_A)  ( 3294 1kgn_A)     0.8288   0.3571   7.4135 (   0    3   10)   0     0.9943   0.4285    6  14
( 6297 1vjx_A)  ( 3587 1lb3_A)     0.6664   0.6664   4.7731 (   0    1    6)   0     0.6664   0.6664    6   6
( 6297 1vjx_A)  ( 4030 1mty_B)     0.8322   0.2778   5.1853 (   0    2   10)   0     0.8322   0.2778    6  18
( 6297 1vjx_A)  ( 4031 1mty_D)     0.8313   0.2083   6.0689 (   0    3   10)   0     0.8313   0.2083    6  24
( 6297 1vjx_A)  ( 4077 1mxr_A)     0.2987   0.2497   8.1901 (   1    3   10)   0     0.6543   0.2497    6  17
( 6297 1vjx_A)  ( 4270 1nig_A)     0.8297   0.6241   6.9908 (   0    2   10)   0     0.8297   0.6241    6   8
( 6297 1vjx_A)  ( 4783 1otk_A)     0.6666   0.4444   3.3462 (   0    1    6)   0     0.6666   0.4444    6   9
( 6297 1vjx_A)  ( 6297 1vjx_A)     1.0000   1.0000   0.0000 (   0    8   15)   0     1.0000   1.0000    6   6

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