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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1247 1eqf_A)  ( 1051 1e6i_A)     0.8333   0.8333   1.8580 (   0    5   10)   0     0.8333   0.8333    6   6
( 1247 1eqf_A)  ( 1246 1eqf_A)     0.9999   0.9999   1.7061 (   0   10   15)   0     0.9999   0.9999    6   6
( 1247 1eqf_A)  ( 1247 1eqf_A)     1.0000   1.0000   0.0000 (   0   10   15)   0     1.0000   1.0000    6   6
( 1247 1eqf_A)  ( 1415 1f68_A)     0.8333   0.8333   1.9502 (   0    5   10)   0     0.8333   0.8333    6   6
( 1247 1eqf_A)  ( 2590 1is2_A)     0.7988   0.6162  12.5828 (   0    3   10)   0     0.7988   0.6162    6   8
( 1247 1eqf_A)  ( 2591 1is2_A)     0.6637   0.3998   8.7743 (   0    5    6)   0     0.6637   0.3998    6  10
( 1247 1eqf_A)  ( 2967 1jm6_A)     0.6577   0.5672  11.6404 (   0    2    6)   0     0.6630   0.5697    6   7
( 1247 1eqf_A)  ( 5016 1pi1_A)     0.6622   0.4989   9.7391 (   0    2    6)   0     0.6622   0.4989    6   8
( 1247 1eqf_A)  ( 5648 1rj1_A)     0.6605   0.4985  10.5815 (   0    3    6)   0     0.8306   0.6244    6   8

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