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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5016 1pi1_A)  ( 1051 1e6i_A)     0.4977   0.6572  11.8218 (   0    3    6)   0     0.4977   0.6572    8   6
( 5016 1pi1_A)  ( 1246 1eqf_A)     0.4992   0.6633   9.0814 (   0    2    6)   0     0.4992   0.6633    8   6
( 5016 1pi1_A)  ( 1247 1eqf_A)     0.4989   0.6622   9.7391 (   0    2    6)   0     0.4989   0.6622    8   6
( 5016 1pi1_A)  ( 1415 1f68_A)     0.1987   0.1996   8.0755 (   2    4    6)   0     0.1987   0.1996    8   6
( 5016 1pi1_A)  ( 2590 1is2_A)     0.4996   0.4996   7.5344 (   0    3    6)   0     0.6025   0.6025    8   8
( 5016 1pi1_A)  ( 2591 1is2_A)     0.6230   0.4994   8.5905 (   0    6   10)   0     0.6230   0.4994    8  10
( 5016 1pi1_A)  ( 2967 1jm6_A)     0.4993   0.5701   8.7631 (   0    1    6)   0     0.5501   0.5701    8   7
( 5016 1pi1_A)  ( 5016 1pi1_A)     1.0000   1.0000   0.0000 (   0   20   28)   0     1.0000   1.0000    8   8
( 5016 1pi1_A)  ( 5648 1rj1_A)     0.4999   0.4999   5.8931 (   0    0    6)   0     0.4999   0.4999    8   8

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