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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2566 1iqc_A)  (  533 1c52  )     0.3879   0.3670   7.2911 (   1    4    6)   0     0.5289   0.4531    6   8
( 2566 1iqc_A)  (  644 1cot  )     0.2970   0.2970   7.5363 (   1    3    6)   0     0.2970   0.2970    6   6
( 2566 1iqc_A)  ( 1005 1e29_A)     0.6662   0.5712   5.4102 (   0    5    6)   0     0.6662   0.5712    6   7
( 2566 1iqc_A)  ( 1333 1ezv_D)   nil
( 2566 1iqc_A)  ( 2054 1h32_A)     0.6649   0.3333   7.6840 (   0    4    6)   0     0.6649   0.3430    6  12
( 2566 1iqc_A)  ( 2055 1h32_A)     0.2970   0.2945   7.3966 (   1    3    6)   0     0.2970   0.2945    6   7
( 2566 1iqc_A)  ( 2566 1iqc_A)     1.0000   1.0000   0.0000 (   0   12   15)   0     1.0000   1.0000    6   6
( 2566 1iqc_A)  ( 2567 1iqc_A)     0.3876   0.3361  10.6793 (   1    4    6)   0     0.3948   0.3670    6  10
( 2566 1iqc_A)  ( 3450 1kv9_A)     0.6624   0.6624   9.6155 (   0    4    6)   0     0.6624   0.6624    6   6
( 2566 1iqc_A)  ( 4964 1pby_A)   nil
( 2566 1iqc_A)  ( 4965 1pby_A)     0.6639   0.5701   8.6684 (   0    5    6)   0     0.6639   0.5701    6   7
( 2566 1iqc_A)  ( 5367 1qks_A)     0.6609   0.5687  10.4103 (   0    4    6)   0     0.6609   0.5687    6   7
( 2566 1iqc_A)  ( 6494 2mta_C)     0.2488   0.2488   7.8525 (   2    5    6)   0     0.2488   0.2488    6   6

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