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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3450 1kv9_A)  (  533 1c52  )     0.3879   0.3670   7.9496 (   1    4    6)   0     0.3879   0.3670    6   8
( 3450 1kv9_A)  (  644 1cot  )   nil
( 3450 1kv9_A)  ( 1005 1e29_A)     0.8324   0.7138   5.0063 (   0    6   10)   0     0.8324   0.7138    6   7
( 3450 1kv9_A)  ( 1333 1ezv_D)   nil
( 3450 1kv9_A)  ( 2054 1h32_A)     0.8325   0.4166   4.7699 (   0    7   10)   0     0.8325   0.4166    6  12
( 3450 1kv9_A)  ( 2055 1h32_A)     0.4667   0.4455   4.9165 (   1    5    6)   0     0.4667   0.4455    6   7
( 3450 1kv9_A)  ( 2566 1iqc_A)     0.6624   0.6624   9.6155 (   0    4    6)   0     0.6624   0.6624    6   6
( 3450 1kv9_A)  ( 2567 1iqc_A)     0.2486   0.2412  13.9057 (   2    5    6)   0     0.2486   0.2412    6  10
( 3450 1kv9_A)  ( 3450 1kv9_A)     1.0000   1.0000   0.0000 (   0   12   15)   0     1.0000   1.0000    6   6
( 3450 1kv9_A)  ( 4964 1pby_A)     0.6661   0.5712   5.7090 (   0    5    6)   0     0.8294   0.7125    6   7
( 3450 1kv9_A)  ( 4965 1pby_A)     0.6663   0.5713   5.1881 (   0    4    6)   0     0.6663   0.5713    6   7
( 3450 1kv9_A)  ( 5367 1qks_A)     0.8319   0.7136   5.5182 (   0    7   10)   0     0.9043   0.8078    6   7
( 3450 1kv9_A)  ( 6494 2mta_C)     0.6666   0.6666   3.7088 (   0    4    6)   0     0.6666   0.6666    6   6

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