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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4965 1pby_A)  (  533 1c52  )     0.5689   0.4987  10.2052 (   0    4    6)   0     0.5689   0.4987    7   8
( 4965 1pby_A)  (  644 1cot  )   nil
( 4965 1pby_A)  ( 1005 1e29_A)     0.5713   0.5713   4.7319 (   0    5    6)   0     0.7136   0.7136    7   7
( 4965 1pby_A)  ( 1333 1ezv_D)   nil
( 4965 1pby_A)  ( 2054 1h32_A)     0.5712   0.3333   5.5856 (   0    6    6)   0     0.6311   0.4093    7  12
( 4965 1pby_A)  ( 2055 1h32_A)     0.2477   0.2477   9.4919 (   2    5    6)   0     0.2477   0.2477    7   7
( 4965 1pby_A)  ( 2566 1iqc_A)     0.5701   0.6639   8.6684 (   0    5    6)   0     0.5701   0.6639    7   6
( 4965 1pby_A)  ( 2567 1iqc_A)   nil
( 4965 1pby_A)  ( 3450 1kv9_A)     0.4455   0.4667   5.6244 (   1    5    6)   0     0.5688   0.6610    7   6
( 4965 1pby_A)  ( 4964 1pby_A)     0.7143   0.7143   2.4960 (   0    9   10)   0     0.7143   0.7143    7   7
( 4965 1pby_A)  ( 4965 1pby_A)     1.0000   1.0000   0.0000 (   0   19   21)   0     1.0000   1.0000    7   7
( 4965 1pby_A)  ( 5367 1qks_A)     0.4915   0.4915   7.0077 (   1    6    6)   0     0.4915   0.4915    7   7
( 4965 1pby_A)  ( 6494 2mta_C)     0.4917   0.5288   4.8231 (   1    6    6)   0     0.4917   0.5288    7   6

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