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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  533 1c52  )  (  533 1c52  )     1.0000   1.0000   0.0000 (   0   23   28)   0     1.0000   1.0000    8   8
(  533 1c52  )  (  644 1cot  )   nil
(  533 1c52  )  ( 1005 1e29_A)     0.5000   0.5714   3.9357 (   0    6    6)   0     0.5000   0.5714    8   7
(  533 1c52  )  ( 1333 1ezv_D)     0.2462   0.2462   7.4201 (   2    5    6)   0     0.2462   0.2462    8   8
(  533 1c52  )  ( 2054 1h32_A)     0.5000   0.3333   4.3962 (   0    5    6)   0     0.5000   0.3776    8  12
(  533 1c52  )  ( 2055 1h32_A)     0.4997   0.5708   7.2449 (   0    2    6)   0     0.4997   0.5709    8   7
(  533 1c52  )  ( 2566 1iqc_A)     0.3670   0.3879   7.2911 (   1    4    6)   0     0.4531   0.5289    8   6
(  533 1c52  )  ( 2567 1iqc_A)     0.4201   0.3669   9.3967 (   1    5    6)   0     0.4201   0.3669    8  10
(  533 1c52  )  ( 3450 1kv9_A)     0.3670   0.3879   7.9496 (   1    4    6)   0     0.3670   0.3879    8   6
(  533 1c52  )  ( 4964 1pby_A)     0.4993   0.5700   8.9081 (   0    5    6)   0     0.4993   0.5700    8   7
(  533 1c52  )  ( 4965 1pby_A)     0.4987   0.5689  10.2052 (   0    4    6)   0     0.4987   0.5689    8   7
(  533 1c52  )  ( 5367 1qks_A)     0.5921   0.6553   7.7747 (   1    9   10)   0     0.5921   0.6553    8   7
(  533 1c52  )  ( 6494 2mta_C)     0.4530   0.5286   6.8085 (   1    6    6)   0     0.4531   0.5287    8   6

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