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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5367 1qks_A)  (  533 1c52  )     0.6553   0.5921   7.7747 (   1    9   10)   0     0.6553   0.5921    7   8
( 5367 1qks_A)  (  644 1cot  )   nil
( 5367 1qks_A)  ( 1005 1e29_A)     0.7142   0.7142   3.4086 (   0    9   10)   0     0.7142   0.7142    7   7
( 5367 1qks_A)  ( 1333 1ezv_D)   nil
( 5367 1qks_A)  ( 2054 1h32_A)     0.7142   0.4167   3.2498 (   0    9   10)   0     0.7142   0.4167    7  12
( 5367 1qks_A)  ( 2055 1h32_A)     0.5714   0.5714   4.0135 (   0    5    6)   0     0.5714   0.5714    7   7
( 5367 1qks_A)  ( 2566 1iqc_A)     0.5687   0.6609  10.4103 (   0    4    6)   0     0.5687   0.6609    7   6
( 5367 1qks_A)  ( 2567 1iqc_A)     0.7142   0.5000   2.9272 (   0    9   10)   0     0.7142   0.5000    7  10
( 5367 1qks_A)  ( 3450 1kv9_A)     0.7136   0.8319   5.5182 (   0    7   10)   0     0.8078   0.9043    7   6
( 5367 1qks_A)  ( 4964 1pby_A)     0.5713   0.5713   4.8597 (   0    5    6)   0     0.6560   0.6560    7   7
( 5367 1qks_A)  ( 4965 1pby_A)     0.4915   0.4915   7.0077 (   1    6    6)   0     0.4915   0.4915    7   7
( 5367 1qks_A)  ( 5367 1qks_A)     1.0000   1.0000   0.0000 (   0   20   21)   0     1.0000   1.0000    7   7
( 5367 1qks_A)  ( 6494 2mta_C)     0.7026   0.8088  11.4548 (   0    9   10)   0     0.7026   0.8088    7   6

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