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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  644 1cot  )  (  533 1c52  )   nil
(  644 1cot  )  (  644 1cot  )     1.0000   1.0000   0.0000 (   0   13   15)   0     1.0000   1.0000    6   6
(  644 1cot  )  ( 1005 1e29_A)     0.4667   0.4455   5.5624 (   1    5    6)   0     0.4667   0.4455    6   7
(  644 1cot  )  ( 1333 1ezv_D)   nil
(  644 1cot  )  ( 2054 1h32_A)     0.2487   0.2334  10.9550 (   2    5    6)   0     0.2487   0.2334    6  12
(  644 1cot  )  ( 2055 1h32_A)   nil
(  644 1cot  )  ( 2566 1iqc_A)     0.2970   0.2970   7.5363 (   1    3    6)   0     0.2970   0.2970    6   6
(  644 1cot  )  ( 2567 1iqc_A)     0.2488   0.2413   8.7071 (   2    5    6)   0     0.2488   0.2413    6  10
(  644 1cot  )  ( 3450 1kv9_A)   nil
(  644 1cot  )  ( 4964 1pby_A)   nil
(  644 1cot  )  ( 4965 1pby_A)   nil
(  644 1cot  )  ( 5367 1qks_A)   nil
(  644 1cot  )  ( 6494 2mta_C)   nil

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