------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [2808, 152]: Comparing 1jba_A and 1alv_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 9 (8 H + 1 S) secondary structure element in 1alv_A, of which 9 satisfy the size requirements. 1.69211 [ 1.53450] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (9 . 6) (11 . 9)) 9.643 {1/13:15} B:0 2.00243 [ 1.80333] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (9 . 9)) 8.452 {0/9:10} B:0 2.00423 [ 1.80579] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (12 . 9)) 9.713 {0/9:10} B:0 2.04659 [ 1.86281] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (12 . 6)) 5.977 {1/9:10} B:0 2.07289 [ 1.89740] ((2 . 4) (4 . 5) (5 . 6) (7 . 7) (11 . 9)) 6.152 {1/8:10} B:0 SIMILARITY (1/min{score1}): 0.5923 [and 1/min{score2}: 0.6539] [2808, 209]: Comparing 1jba_A and 1aui_B, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 14 (10 H + 4 S) secondary structure elements in 1aui_B, of which 9 satisfy the size requirements. 1.25018 [ 1.12525] ((2 . 1) (4 . 3) (5 . 5) (7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 13)) 3.105 {0/25:28} B:0 1.42864 [ 1.28581] ((2 . 1) (4 . 3) (7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 13)) 2.718 {0/18:21} B:0 2.50005 [ 2.25007] ((2 . 8) (4 . 10) (5 . 11) (7 . 13)) 3.820 {0/6:6} B:0 2.50179 [ 2.25245] ((4 . 1) (5 . 3) (9 . 8) (10 . 10)) 9.252 {0/5:6} B:0 2.61679 [ 2.40502] ((4 . 4) (5 . 5) (9 . 11) (10 . 13)) 9.233 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.7999 [and 1/min{score2}: 0.8887] [2808, 520]: Comparing 1jba_A and 1c3y_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1c3y_A, of which 6 satisfy the size requirements. 2.50006 [ 1.50026] ((2 . 3) (4 . 4) (5 . 5) (7 . 6)) 3.910 {0/5:6} B:0 2.50247 [ 1.51132] ((5 . 1) (7 . 2) (8 . 3) (9 . 4)) 10.032 {0/5:6} B:0 3.43664 [ 3.34745] ((7 . 2) (8 . 3) (9 . 4) (11 . 6) (12 . 5)) 6.743 {3/9:10} B:1 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6665] [2808, 835]: Comparing 1jba_A and 1dgu_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 11 (9 H + 2 S) secondary structure elements in 1dgu_A, of which 10 satisfy the size requirements. 1.25022 [ 1.25022] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (8 . 5) (9 . 7) (10 . 8) (11 . 10)) 3.241 {0/25:28} B:0 2.00088 [ 2.00088] ((1 . 1) (5 . 3) (7 . 4) (8 . 5) (9 . 7)) 6.552 {0/9:10} B:0 2.50003 [ 2.50003] ((2 . 5) (4 . 7) (5 . 8) (7 . 10)) 3.456 {0/6:6} B:0 2.50010 [ 2.50010] ((8 . 1) (9 . 2) (10 . 3) (11 . 4)) 4.503 {0/6:6} B:0 2.50145 [ 2.50145] ((2 . 1) (4 . 4) (9 . 7) (10 . 8)) 8.783 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7999 [and 1/min{score2}: 0.7999] [2808, 917]: Comparing 1jba_A and 1dqe_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1dqe_A, of which 7 satisfy the size requirements. 1.66931 [ 1.17431] ((5 . 2) (7 . 3) (8 . 4) (9 . 5) (10 . 6) (11 . 7)) 7.528 {0/11:15} B:0 2.04699 [ 1.52433] ((5 . 1) (8 . 4) (9 . 5) (10 . 6) (11 . 7)) 6.836 {1/9:10} B:0 2.50019 [ 1.75055] ((2 . 4) (4 . 5) (5 . 6) (7 . 7)) 5.274 {0/6:6} B:0 2.50071 [ 1.75208] ((2 . 4) (4 . 5) (5 . 6) (8 . 7)) 7.356 {0/5:6} B:0 2.50670 [ 1.76928] ((4 . 1) (5 . 2) (9 . 6) (10 . 7)) 12.882 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5991 [and 1/min{score2}: 0.8516] [2808, 1142]: Comparing 1jba_A and 1eg3_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 19 (14 H + 5 S) secondary structure elements in 1eg3_A, of which 8 satisfy the size requirements. 2.50115 [ 2.00224] ((4 . 5) (5 . 6) (9 . 11) (10 . 13)) 8.286 {0/5:6} B:0 2.50148 [ 2.00289] ((2 . 8) (4 . 10) (5 . 11) (8 . 13)) 8.827 {0/4:6} B:0 2.50149 [ 2.00291] ((4 . 8) (5 . 10) (8 . 11) (9 . 13)) 8.845 {0/4:6} B:0 2.50179 [ 2.00350] ((1 . 8) (4 . 10) (5 . 11) (7 . 13)) 9.262 {0/4:6} B:0 1.66818 [ 1.33629] ((2 . 8) (4 . 10) (5 . 11) (7 . 13) (10 . 5) (12 . 6)) 6.551 {0/11:15} B:1 SIMILARITY (1/min{score1}): 0.5995 [and 1/min{score2}: 0.7483] [2808, 1143]: Comparing 1jba_A and 1eg3_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 19 (14 H + 5 S) secondary structure elements in 1eg3_A, of which 6 satisfy the size requirements. 2.00073 [ 1.20336] ((8 . 14) (9 . 15) (10 . 17) (11 . 18) (12 . 19)) 6.252 {0/10:10} B:0 2.50003 [ 1.50015] ((8 . 14) (9 . 15) (10 . 17) (11 . 18)) 3.379 {0/6:6} B:0 2.50027 [ 1.50126] ((2 . 14) (4 . 15) (5 . 17) (7 . 18)) 5.783 {0/6:6} B:0 2.50027 [ 1.50127] ((2 . 14) (4 . 15) (5 . 16) (7 . 18)) 5.789 {0/6:6} B:0 2.61690 [ 1.89507] ((4 . 14) (5 . 15) (8 . 17) (9 . 18)) 9.394 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.8310] [2808, 1306]: Comparing 1jba_A and 1exr_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 9 (7 H + 2 S) secondary structure elements in 1exr_A, of which 7 satisfy the size requirements. 2.50017 [ 1.75048] ((2 . 6) (4 . 7) (5 . 8) (7 . 9)) 5.104 {0/5:6} B:0 2.50077 [ 1.75223] ((2 . 1) (4 . 3) (5 . 4) (7 . 6)) 7.489 {0/5:6} B:0 2.50079 [ 1.75230] ((8 . 1) (9 . 3) (10 . 4) (11 . 6)) 7.542 {0/5:6} B:0 2.72745 [ 2.25057] ((5 . 3) (7 . 4) (10 . 8) (11 . 9)) 11.598 {1/5:6} B:0 3.57462 [ 3.39973] ((2 . 1) (4 . 3) (5 . 4) (9 . 7)) 14.918 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.5713] [2808, 1508]: Comparing 1jba_A and 1fi6_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 6 (4 H + 2 S) secondary structure elements in 1fi6_A, of which 6 satisfy the size requirements. 2.50003 [ 1.50016] ((2 . 1) (4 . 3) (5 . 4) (7 . 6)) 3.423 {0/5:6} B:0 2.50018 [ 1.50082] ((8 . 1) (9 . 3) (10 . 4) (11 . 6)) 5.189 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6666] [2808, 2262]: Comparing 1jba_A and 1hqv_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1hqv_A, of which 8 satisfy the size requirements. 2.50015 [ 2.00029] ((2 . 4) (4 . 5) (5 . 6) (7 . 7)) 4.974 {0/6:6} B:0 2.50046 [ 2.00091] ((8 . 1) (9 . 2) (10 . 3) (11 . 4)) 6.603 {0/6:6} B:0 2.50070 [ 2.00136] ((8 . 4) (9 . 5) (10 . 6) (11 . 7)) 7.311 {0/6:6} B:0 2.50227 [ 2.00442] ((2 . 2) (4 . 3) (5 . 4) (8 . 5)) 9.819 {0/4:6} B:0 2.50476 [ 2.00926] ((8 . 5) (9 . 6) (10 . 7) (11 . 8)) 11.824 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.4999] [2808, 2512]: Comparing 1jba_A and 1ij5_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 20 (16 H + 4 S) secondary structure elements in 1ij5_A, of which 14 satisfy the size requirements. 2.50007 [ 3.50003] ((2 . 14) (4 . 16) (5 . 18) (7 . 20)) 4.105 {0/6:6} B:0 2.50015 [ 3.50005] ((4 . 11) (5 . 12) (7 . 14) (9 . 18)) 4.967 {0/5:6} B:0 2.50112 [ 3.50041] ((8 . 7) (9 . 11) (10 . 12) (11 . 14)) 8.229 {0/5:6} B:0 2.52303 [ 3.04515] ((4 . 2) (5 . 4) (8 . 6) (10 . 12) (12 . 20)) 9.705 {2/9:10} B:0 2.72627 [ 3.59076] ((4 . 8) (5 . 11) (7 . 12) (10 . 18)) 10.429 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6949 [and 1/min{score2}: 0.4990] [2808, 2808]: Comparing 1jba_A and 1jba_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12)) 0.000 {0/42:45} B:0 2.50017 [ 2.50017] ((2 . 8) (4 . 9) (5 . 10) (7 . 11)) 5.099 {0/6:6} B:0 2.50017 [ 2.50017] ((8 . 2) (9 . 4) (10 . 5) (11 . 7)) 5.099 {0/6:6} B:0 2.61729 [ 2.61729] ((4 . 8) (5 . 9) (8 . 10) (9 . 11)) 9.900 {1/6:6} B:0 2.61729 [ 2.61729] ((8 . 4) (9 . 5) (10 . 8) (11 . 9)) 9.900 {1/6:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [2808, 2851]: Comparing 1jba_A and 1jfk_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 12 (8 H + 4 S) secondary structure elements in 1jfk_A, of which 12 satisfy the size requirements. 2.50007 [ 3.00004] ((8 . 1) (9 . 3) (10 . 4) (11 . 6)) 4.041 {0/6:6} B:0 2.50015 [ 3.00008] ((2 . 7) (4 . 9) (5 . 10) (7 . 12)) 4.942 {0/4:6} B:0 2.61620 [ 3.06962] ((4 . 1) (5 . 3) (7 . 4) (10 . 10)) 8.181 {1/6:6} B:0 2.61794 [ 3.07069] ((4 . 3) (5 . 4) (7 . 6) (9 . 9)) 10.606 {1/6:6} B:0 2.62027 [ 3.07214] ((8 . 1) (9 . 3) (11 . 7) (12 . 9)) 12.398 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.3430] [2808, 3221]: Comparing 1jba_A and 1k8u_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 8 (6 H + 2 S) secondary structure elements in 1k8u_A, of which 6 satisfy the size requirements. 2.72421 [ 2.14262] ((2 . 1) (4 . 3) (5 . 5) (7 . 7)) 5.423 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.3671 [and 1/min{score2}: 0.4667] [2808, 3227]: Comparing 1jba_A and 1k94_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 9 (8 H + 1 S) secondary structure element in 1k94_A, of which 9 satisfy the size requirements. 2.00020 [ 1.80028] ((1 . 2) (2 . 4) (4 . 5) (5 . 6) (7 . 7)) 4.548 {0/10:10} B:0 2.07295 [ 1.89747] ((2 . 4) (4 . 5) (5 . 6) (7 . 7) (11 . 9)) 6.292 {1/8:10} B:0 2.50010 [ 2.25013] ((2 . 4) (4 . 5) (5 . 6) (7 . 7)) 4.461 {0/6:6} B:0 2.50049 [ 2.25068] ((8 . 4) (9 . 5) (10 . 6) (11 . 7)) 6.710 {0/6:6} B:0 2.50100 [ 2.25137] ((8 . 1) (9 . 2) (10 . 3) (11 . 4)) 8.000 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.5555] [2808, 3816]: Comparing 1jba_A and 1m39_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 7 (5 H + 2 S) secondary structure elements in 1m39_A, of which 7 satisfy the size requirements. NO SIMILARITY! [2808, 3829]: Comparing 1jba_A and 1m45_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 13 (9 H + 4 S) secondary structure elements in 1m45_A, of which 12 satisfy the size requirements. 2.50004 [ 3.00002] ((2 . 8) (4 . 10) (5 . 11) (7 . 13)) 3.621 {0/6:6} B:0 2.50045 [ 3.00026] ((2 . 7) (4 . 10) (5 . 11) (7 . 13)) 6.557 {0/4:6} B:0 2.50254 [ 3.00147] ((8 . 3) (9 . 4) (10 . 8) (11 . 10)) 10.108 {0/6:6} B:0 2.61919 [ 3.07147] ((4 . 3) (5 . 4) (7 . 6) (8 . 8)) 11.675 {1/6:6} B:0 2.72421 [ 3.13840] ((9 . 3) (10 . 4) (11 . 6) (12 . 7)) 5.469 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.3333] [2808, 4437]: Comparing 1jba_A and 1nya_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 10 (8 H + 2 S) secondary structure elements in 1nya_A, of which 10 satisfy the size requirements. 2.00079 [ 2.00079] ((2 . 1) (4 . 2) (5 . 3) (7 . 4) (9 . 5)) 6.373 {0/9:10} B:0 2.04632 [ 2.04632] ((8 . 1) (9 . 2) (10 . 3) (11 . 4) (12 . 5)) 5.101 {1/9:10} B:0 2.04860 [ 2.04860] ((1 . 4) (2 . 5) (4 . 7) (5 . 8) (7 . 10)) 8.727 {1/9:10} B:0 2.31691 [ 2.31691] ((5 . 2) (7 . 3) (8 . 5) (9 . 7) (10 . 8) (11 . 10)) 5.596 {3/14:15} B:0 2.50002 [ 2.50002] ((2 . 5) (4 . 7) (5 . 8) (7 . 10)) 2.838 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.4998] [2808, 4715]: Comparing 1jba_A and 1omr_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 16 (14 H + 2 S) secondary structure elements in 1omr_A, of which 14 satisfy the size requirements. 1.11301 [ 1.55625] ((2 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 9) (9 . 10) (10 . 13) (11 . 14) (12 . 15)) 2.778 {1/32:36} B:0 2.03080 [ 2.11077] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 9) (9 . 10) (10 . 13) (11 . 14) (12 . 15)) 4.859 {8/40:45} B:0 2.03222 [ 2.81195] ((8 . 2) (9 . 4) (10 . 5) (11 . 7) (12 . 10)) 7.786 {1/10:10} B:0 2.50013 [ 3.50005] ((2 . 9) (4 . 10) (5 . 13) (7 . 14)) 4.835 {0/6:6} B:0 2.50015 [ 3.50005] ((8 . 2) (9 . 4) (10 . 5) (11 . 7)) 4.960 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.8985 [and 1/min{score2}: 0.6426] [2808, 4740]: Comparing 1jba_A and 1ooh_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1ooh_A, of which 6 satisfy the size requirements. 2.07301 [ 1.45979] ((5 . 1) (8 . 4) (9 . 5) (10 . 6) (11 . 8)) 6.432 {1/8:10} B:0 2.50009 [ 1.50044] ((2 . 4) (4 . 5) (5 . 6) (7 . 8)) 4.441 {0/5:6} B:0 2.72442 [ 2.14307] ((5 . 1) (8 . 4) (9 . 5) (10 . 6)) 6.698 {1/5:6} B:0 4.14528 [ 4.02042] ((9 . 1) (10 . 4) (11 . 5) (12 . 6)) 10.772 {2/5:6} B:0 6.04479 [ 6.00593] ((4 . 1) (8 . 4) (9 . 6) (10 . 8)) 8.213 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.4824 [and 1/min{score2}: 0.6850] [2808, 4870]: Comparing 1jba_A and 1p28_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 1p28_A, of which 6 satisfy the size requirements. 1.85777 [ 1.50975] ((5 . 1) (7 . 2) (8 . 3) (9 . 4) (10 . 5) (11 . 6)) 6.688 {2/14:15} B:0 2.50011 [ 1.50052] ((2 . 3) (4 . 4) (5 . 5) (7 . 6)) 4.632 {0/6:6} B:0 3.57137 [ 3.36806] ((1 . 2) (2 . 3) (4 . 4) (5 . 5)) 10.167 {2/6:6} B:0 5.07692 [ 5.01067] ((9 . 1) (10 . 3) (11 . 4) (12 . 5)) 11.762 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.5383 [and 1/min{score2}: 0.6664] [2808, 5465]: Comparing 1jba_A and 1qv0_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 12 (10 H + 2 S) secondary structure elements in 1qv0_A, of which 9 satisfy the size requirements. 2.00020 [ 1.80028] ((7 . 4) (8 . 6) (9 . 8) (10 . 9) (11 . 11)) 4.531 {0/8:10} B:0 2.04781 [ 1.86443] ((1 . 5) (2 . 6) (4 . 8) (5 . 9) (7 . 11)) 7.967 {1/9:10} B:0 2.07354 [ 1.89824] ((5 . 4) (8 . 6) (9 . 8) (10 . 9) (11 . 11)) 7.363 {1/8:10} B:0 2.50037 [ 2.25051] ((2 . 1) (4 . 2) (5 . 4) (9 . 6)) 6.243 {0/5:6} B:0 2.50174 [ 2.25238] ((5 . 4) (7 . 5) (8 . 6) (9 . 8)) 9.184 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6229 [and 1/min{score2}: 0.6661] [2808, 5565]: Comparing 1jba_A and 1r5r_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1r5r_A, of which 7 satisfy the size requirements. 1.66851 [ 1.17200] ((5 . 1) (7 . 3) (8 . 4) (9 . 5) (10 . 6) (11 . 7)) 6.877 {0/14:15} B:0 2.72551 [ 2.24711] ((9 . 2) (10 . 4) (11 . 5) (12 . 6)) 9.392 {1/5:6} B:0 3.13919 [ 3.03595] ((1 . 3) (2 . 4) (4 . 5) (5 . 6) (7 . 7)) 9.246 {3/10:10} B:0 3.57065 [ 3.39511] ((9 . 1) (10 . 2) (11 . 3) (12 . 4)) 6.736 {2/6:6} B:0 3.57080 [ 3.39528] ((4 . 2) (5 . 3) (8 . 5) (9 . 7)) 7.851 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.5993 [and 1/min{score2}: 0.8532] [2808, 5774]: Comparing 1jba_A and 1s6c_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 14 (10 H + 4 S) secondary structure elements in 1s6c_A, of which 10 satisfy the size requirements. 1.11295 [ 1.11295] ((2 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 13) (12 . 14)) 2.501 {1/32:36} B:0 1.25006 [ 1.25006] ((2 . 2) (5 . 5) (7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 13) (12 . 14)) 2.344 {0/25:28} B:0 1.60306 [ 1.60306] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 13) (12 . 14)) 3.344 {6/39:45} B:0 2.50004 [ 2.50004] ((8 . 2) (9 . 4) (10 . 5) (11 . 7)) 3.570 {0/6:6} B:0 2.52153 [ 2.52153] ((2 . 8) (4 . 10) (5 . 11) (7 . 13) (8 . 14)) 7.128 {2/9:10} B:0 SIMILARITY (1/min{score1}): 0.8985 [and 1/min{score2}: 0.8985] [2808, 5845]: Comparing 1jba_A and 1sra, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 11 (9 H + 2 S) secondary structure elements in 1sra, of which 7 satisfy the size requirements. 2.04935 [ 1.53003] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (7 . 9)) 9.306 {1/9:10} B:0 2.50009 [ 1.75026] ((2 . 4) (4 . 6) (5 . 7) (7 . 9)) 4.380 {0/5:6} B:0 2.50201 [ 1.75583] ((2 . 2) (4 . 3) (8 . 7) (9 . 9)) 9.527 {0/4:6} B:0 2.62113 [ 2.04582] ((7 . 1) (8 . 2) (9 . 3) (11 . 7)) 12.900 {1/6:6} B:0 3.57090 [ 3.39540] ((5 . 1) (8 . 4) (9 . 6) (12 . 7)) 8.416 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.5996 [and 1/min{score2}: 0.8551] [2808, 6021]: Comparing 1jba_A and 1uhn_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 11 (11 H + 0 S) secondary structure elements in 1uhn_A, of which 11 satisfy the size requirements. 1.14218 [ 1.24587] ((2 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (11 . 9) (12 . 10)) 4.149 {2/31:36} B:0 1.25437 [ 1.37829] ((2 . 2) (5 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (11 . 9) (12 . 10)) 4.064 {1/24:28} B:0 1.66785 [ 1.83422] ((2 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (9 . 9)) 6.153 {0/14:15} B:0 1.88115 [ 1.89834] ((1 . 1) (2 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (11 . 9) (12 . 10)) 4.729 {7/38:45} B:0 2.00049 [ 2.20037] ((2 . 2) (4 . 3) (5 . 4) (7 . 5) (9 . 9)) 5.663 {0/10:10} B:0 SIMILARITY (1/min{score1}): 0.8755 [and 1/min{score2}: 0.8027] [2808, 6327]: Comparing 1jba_A and 1wdc_B, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 11 (8 H + 3 S) secondary structure elements in 1wdc_B, of which 8 satisfy the size requirements. 2.50003 [ 2.00006] ((2 . 1) (4 . 2) (5 . 3) (7 . 4)) 3.369 {0/6:6} B:0 2.50004 [ 2.00008] ((2 . 5) (4 . 7) (5 . 8) (7 . 11)) 3.594 {0/6:6} B:0 2.50519 [ 2.01009] ((4 . 1) (9 . 7) (10 . 8) (11 . 11)) 12.083 {0/5:6} B:0 2.61926 [ 2.21347] ((2 . 1) (4 . 2) (7 . 5) (9 . 8)) 11.725 {1/6:6} B:0 2.72889 [ 2.38569] ((4 . 1) (7 . 3) (10 . 8) (11 . 11)) 12.670 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.5000] [2808, 6416]: Comparing 1jba_A and 2cbl_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 20 (14 H + 6 S) secondary structure elements in 2cbl_A, of which 7 satisfy the size requirements. 2.07285 [ 1.58450] ((2 . 8) (4 . 10) (5 . 11) (7 . 13) (8 . 14)) 6.043 {1/8:10} B:0 2.50005 [ 1.75014] ((2 . 8) (4 . 10) (5 . 11) (7 . 13)) 3.738 {0/5:6} B:0 2.61723 [ 2.03760] ((4 . 8) (5 . 10) (7 . 11) (9 . 14)) 9.831 {1/6:6} B:0 4.14507 [ 4.03670] ((4 . 8) (5 . 10) (7 . 11) (8 . 13)) 9.883 {2/5:6} B:0 4.48934 [ 4.45537] ((8 . 8) (9 . 10) (10 . 11) (11 . 13) (12 . 14)) 4.712 {4/9:10} B:0 SIMILARITY (1/min{score1}): 0.4824 [and 1/min{score2}: 0.6311] [2808, 6521]: Comparing 1jba_A and 2pvb_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 6 (6 H + 0 S) secondary structure elements in 2pvb_A, of which 6 satisfy the size requirements. 2.50005 [ 1.50021] ((2 . 3) (4 . 4) (5 . 5) (7 . 6)) 3.689 {0/6:6} B:0 2.50018 [ 1.50083] ((7 . 1) (8 . 2) (9 . 3) (10 . 6)) 5.211 {0/5:6} B:0 2.72504 [ 2.14432] ((7 . 1) (8 . 2) (9 . 3) (10 . 5)) 8.516 {1/5:6} B:0 2.72559 [ 2.14547] ((4 . 1) (5 . 2) (7 . 3) (8 . 4)) 9.524 {1/5:6} B:0 3.57112 [ 3.36776] ((4 . 1) (7 . 3) (8 . 4) (9 . 5)) 9.356 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6666] [2808, 6527]: Comparing 1jba_A and 2sas, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 12 (10 H + 2 S) secondary structure elements in 2sas, of which 9 satisfy the size requirements. 2.03061 [ 1.84150] ((8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12)) 3.445 {1/10:10} B:0 2.04666 [ 1.86291] ((2 . 8) (4 . 9) (5 . 10) (7 . 11) (8 . 12)) 6.169 {1/9:10} B:0 2.50002 [ 2.25003] ((2 . 8) (4 . 9) (5 . 10) (7 . 11)) 3.134 {0/6:6} B:0 2.61990 [ 2.40902] ((1 . 4) (2 . 6) (5 . 9) (7 . 10)) 12.166 {1/6:6} B:0 2.82525 [ 2.80923] ((4 . 3) (7 . 4) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12)) 5.102 {5/18:21} B:0 SIMILARITY (1/min{score1}): 0.4925 [and 1/min{score2}: 0.5430] [2808, 6528]: Comparing 1jba_A and 2scp_A, based on their crossing files. There are 12 (10 H + 2 S) secondary structure elements in 1jba_A, of which 10 satisfy the size requirements. There are 13 (9 H + 4 S) secondary structure elements in 2scp_A, of which 9 satisfy the size requirements. 1.66729 [ 1.50085] ((7 . 4) (8 . 7) (9 . 9) (10 . 10) (11 . 12) (12 . 13)) 5.245 {0/13:15} B:0 1.68635 [ 1.52676] ((5 . 4) (8 . 7) (9 . 9) (10 . 10) (11 . 12) (12 . 13)) 6.088 {1/13:15} B:0 2.03184 [ 1.84316] ((2 . 7) (4 . 9) (5 . 10) (7 . 12) (9 . 13)) 7.313 {1/10:10} B:0 2.04899 [ 1.86599] ((1 . 6) (2 . 7) (4 . 9) (5 . 10) (7 . 12)) 9.043 {1/9:10} B:0 2.11947 [ 1.95731] ((4 . 3) (5 . 4) (9 . 7) (10 . 12) (12 . 13)) 5.563 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.6663] -------------------------------------------------------------------------------------------------------------------------