------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2851 1jfk_A) ( 152 1alv_A) 0.4166 0.5553 5.6556 ( 0 8 10) 0 0.4166 0.5553 12 9 ( 2851 1jfk_A) ( 209 1aui_B) 0.3630 0.4114 6.3469 ( 2 9 10) 0 0.4043 0.5104 12 9 ( 2851 1jfk_A) ( 520 1c3y_A) 0.3333 0.6665 3.9220 ( 0 5 6) 0 0.3333 0.6665 12 6 ( 2851 1jfk_A) ( 835 1dgu_A) 0.5000 0.6000 3.3992 ( 0 11 15) 0 0.5000 0.6000 12 10 ( 2851 1jfk_A) ( 917 1dqe_A) 0.3333 0.5713 4.6936 ( 0 6 6) 0 0.3333 0.5713 12 7 ( 2851 1jfk_A) ( 1142 1eg3_A) 0.4973 0.7305 3.3088 ( 1 13 15) 0 0.4973 0.7305 12 8 ( 2851 1jfk_A) ( 1143 1eg3_A) 0.3630 0.4409 5.1503 ( 2 9 10) 0 0.4530 0.8327 12 6 ( 2851 1jfk_A) ( 1306 1exr_A) 0.4164 0.7111 8.2378 ( 0 8 10) 0 0.4164 0.7111 12 7 ( 2851 1jfk_A) ( 1508 1fi6_A) 0.4980 0.9436 3.0175 ( 1 14 15) 0 0.4980 0.9437 12 6 ( 2851 1jfk_A) ( 2262 1hqv_A) 0.4165 0.6241 7.0666 ( 0 9 10) 0 0.4165 0.6241 12 8 ( 2851 1jfk_A) ( 2512 1ij5_A) 0.4387 0.3960 8.3611 ( 2 11 15) 0 0.4387 0.3960 12 14 ( 2851 1jfk_A) ( 2808 1jba_A) 0.3430 0.3670 7.1311 ( 2 8 10) 0 0.3430 0.4000 12 10 ( 2851 1jfk_A) ( 2851 1jfk_A) 1.0000 1.0000 0.0000 ( 0 59 66) 0 1.0000 1.0000 12 12 ( 2851 1jfk_A) ( 3221 1k8u_A) 0.4924 0.8397 5.2797 ( 1 10 15) 0 0.4924 0.8397 12 6 ( 2851 1jfk_A) ( 3227 1k94_A) 0.4166 0.5553 5.9397 ( 0 6 10) 0 0.4941 0.6433 12 9 ( 2851 1jfk_A) ( 3816 1m39_A) 0.5000 0.8570 2.7176 ( 0 12 15) 0 0.5000 0.8570 12 7 ( 2851 1jfk_A) ( 3829 1m45_A) 0.4390 0.4390 2.7450 ( 2 11 15) 0 0.6197 0.6197 12 12 ( 2851 1jfk_A) ( 4437 1nya_A) 0.5000 0.6000 3.1585 ( 0 15 15) 0 0.5000 0.6000 12 10 ( 2851 1jfk_A) ( 4715 1omr_A) 0.4985 0.4279 2.8607 ( 1 15 15) 0 0.5094 0.4606 12 14 ( 2851 1jfk_A) ( 4740 1ooh_A) 0.3333 0.6665 4.5247 ( 0 4 6) 0 0.3333 0.6665 12 6 ( 2851 1jfk_A) ( 4870 1p28_A) 0.3333 0.6665 4.2369 ( 0 6 6) 0 0.3333 0.6665 12 6 ( 2851 1jfk_A) ( 5465 1qv0_A) 0.4164 0.5543 8.8277 ( 0 6 10) 0 0.4164 0.5543 12 9 ( 2851 1jfk_A) ( 5565 1r5r_A) 0.3333 0.5714 3.9764 ( 0 6 6) 0 0.3333 0.5714 12 7 ( 2851 1jfk_A) ( 5774 1s6c_A) 0.4166 0.4999 5.2588 ( 0 6 10) 0 0.4166 0.4999 12 10 ( 2851 1jfk_A) ( 5845 1sra ) 0.3333 0.5714 2.6483 ( 0 3 6) 0 0.3333 0.5714 12 7 ( 2851 1jfk_A) ( 6021 1uhn_A) 0.4997 0.5450 7.1131 ( 0 13 15) 0 0.4997 0.5450 12 11 ( 2851 1jfk_A) ( 6327 1wdc_B) 0.4166 0.6247 5.1847 ( 0 6 10) 0 0.4166 0.6247 12 8 ( 2851 1jfk_A) ( 6416 2cbl_A) 0.4963 0.8089 2.1294 ( 1 12 15) 0 0.4963 0.8089 12 7 ( 2851 1jfk_A) ( 6521 2pvb_A) 0.3333 0.6666 2.6614 ( 0 6 6) 0 0.3333 0.6666 12 6 ( 2851 1jfk_A) ( 6527 2sas ) 0.4119 0.5366 7.1004 ( 1 9 10) 0 0.4119 0.5366 12 9 ( 2851 1jfk_A) ( 6528 2scp_A) 0.3333 0.4444 4.1287 ( 0 4 6) 0 0.4384 0.4990 12 9 -------------------------------------------------------------------------------------------------------------------------