------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3829 1m45_A) ( 152 1alv_A) 0.4072 0.5198 14.9563 ( 1 8 10) 0 0.4166 0.5553 12 9 ( 3829 1m45_A) ( 209 1aui_B) 0.4087 0.5251 10.9091 ( 1 8 10) 0 0.4087 0.5251 12 9 ( 3829 1m45_A) ( 520 1c3y_A) 0.3333 0.6666 3.8284 ( 0 5 6) 0 0.3333 0.6666 12 6 ( 3829 1m45_A) ( 835 1dgu_A) 0.4638 0.5235 3.0349 ( 2 13 15) 0 0.4638 0.5235 12 10 ( 3829 1m45_A) ( 917 1dqe_A) 0.3333 0.5713 4.8664 ( 0 6 6) 0 0.4998 0.8540 12 7 ( 3829 1m45_A) ( 1142 1eg3_A) 0.4963 0.7237 3.8411 ( 1 12 15) 0 0.4963 0.7237 12 8 ( 3829 1m45_A) ( 1143 1eg3_A) 0.3333 0.6665 4.1577 ( 0 6 6) 0 0.3430 0.6665 12 6 ( 3829 1m45_A) ( 1306 1exr_A) 0.3333 0.5707 7.5380 ( 0 5 6) 0 0.3333 0.5707 12 7 ( 3829 1m45_A) ( 1508 1fi6_A) 0.4973 0.9275 3.1135 ( 1 13 15) 0 0.4973 0.9275 12 6 ( 3829 1m45_A) ( 2262 1hqv_A) 0.3333 0.4999 4.9381 ( 0 6 6) 0 0.4166 0.6247 12 8 ( 3829 1m45_A) ( 2512 1ij5_A) 0.3333 0.2857 4.7119 ( 0 6 6) 0 0.4885 0.4231 12 14 ( 3829 1m45_A) ( 2808 1jba_A) 0.3333 0.4000 3.6215 ( 0 6 6) 0 0.3333 0.4000 12 10 ( 3829 1m45_A) ( 2851 1jfk_A) 0.4390 0.4390 2.7450 ( 2 11 15) 0 0.6197 0.6197 12 12 ( 3829 1m45_A) ( 3221 1k8u_A) 0.4638 0.6238 3.8556 ( 2 13 15) 0 0.4638 0.7260 12 6 ( 3829 1m45_A) ( 3227 1k94_A) 0.3333 0.4444 5.2831 ( 0 6 6) 0 0.4166 0.5552 12 9 ( 3829 1m45_A) ( 3816 1m39_A) 0.3875 0.4265 3.8000 ( 3 13 15) 0 0.4093 0.6314 12 7 ( 3829 1m45_A) ( 3829 1m45_A) 1.0000 1.0000 0.0000 ( 0 59 66) 0 1.0000 1.0000 12 12 ( 3829 1m45_A) ( 4437 1nya_A) 0.4973 0.5386 2.9897 ( 3 18 21) 0 0.5600 0.6474 12 10 ( 3829 1m45_A) ( 4715 1omr_A) 0.3776 0.3371 5.2623 ( 2 10 10) 0 0.5000 0.4710 12 14 ( 3829 1m45_A) ( 4740 1ooh_A) 0.3333 0.6666 3.8631 ( 0 5 6) 0 0.3333 0.6666 12 6 ( 3829 1m45_A) ( 4870 1p28_A) 0.3333 0.6665 4.1412 ( 0 6 6) 0 0.3333 0.6665 12 6 ( 3829 1m45_A) ( 5465 1qv0_A) 0.4164 0.5546 8.3243 ( 0 8 10) 0 0.4943 0.6439 12 9 ( 3829 1m45_A) ( 5565 1r5r_A) 0.3333 0.5714 3.0463 ( 0 6 6) 0 0.3333 0.5714 12 7 ( 3829 1m45_A) ( 5774 1s6c_A) 0.4165 0.4995 8.0981 ( 0 8 10) 0 0.4165 0.4995 12 10 ( 3829 1m45_A) ( 5845 1sra ) 0.4167 0.7142 3.4026 ( 0 7 10) 0 0.4167 0.7142 12 7 ( 3829 1m45_A) ( 6021 1uhn_A) 0.4091 0.4431 8.1142 ( 1 8 10) 0 0.4091 0.4431 12 11 ( 3829 1m45_A) ( 6327 1wdc_B) 0.4963 0.7237 3.9704 ( 1 12 15) 0 0.4963 0.7237 12 8 ( 3829 1m45_A) ( 6416 2cbl_A) 0.4948 0.7924 2.0610 ( 1 11 15) 0 0.4963 0.8090 12 7 ( 3829 1m45_A) ( 6521 2pvb_A) 0.3333 0.6666 2.6158 ( 0 6 6) 0 0.3333 0.6666 12 6 ( 3829 1m45_A) ( 6527 2sas ) 0.4115 0.5353 10.0857 ( 1 9 10) 0 0.4387 0.5353 12 9 ( 3829 1m45_A) ( 6528 2scp_A) 0.3333 0.4444 3.8685 ( 0 6 6) 0 0.4166 0.5552 12 9 -------------------------------------------------------------------------------------------------------------------------