------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 520 1c3y_A) ( 152 1alv_A) 0.8318 0.5553 5.6521 ( 0 8 10) 0 0.8318 0.5553 6 9 ( 520 1c3y_A) ( 209 1aui_B) 0.8325 0.5554 4.8418 ( 0 8 10) 0 0.8325 0.5554 6 9 ( 520 1c3y_A) ( 520 1c3y_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 520 1c3y_A) ( 835 1dgu_A) 0.8321 0.4999 5.3618 ( 0 8 10) 0 0.8321 0.4999 6 10 ( 520 1c3y_A) ( 917 1dqe_A) 0.9980 0.8562 4.7780 ( 0 9 15) 0 0.9980 0.8562 6 7 ( 520 1c3y_A) ( 1142 1eg3_A) 0.6661 0.4999 5.7107 ( 0 4 6) 0 0.6661 0.4999 6 8 ( 520 1c3y_A) ( 1143 1eg3_A) nil ( 520 1c3y_A) ( 1306 1exr_A) 0.6650 0.5707 7.5906 ( 0 4 6) 0 0.6650 0.5707 6 7 ( 520 1c3y_A) ( 1508 1fi6_A) 0.6667 0.6667 2.2974 ( 0 5 6) 0 0.6667 0.6667 6 6 ( 520 1c3y_A) ( 2262 1hqv_A) 0.6664 0.4999 4.6724 ( 0 5 6) 0 0.6664 0.4999 6 8 ( 520 1c3y_A) ( 2512 1ij5_A) 0.8327 0.3571 4.4450 ( 0 8 10) 0 0.8327 0.3571 6 14 ( 520 1c3y_A) ( 2808 1jba_A) 0.6665 0.4000 3.9105 ( 0 5 6) 0 0.6665 0.4000 6 10 ( 520 1c3y_A) ( 2851 1jfk_A) 0.6665 0.3333 3.9220 ( 0 5 6) 0 0.6665 0.3333 6 12 ( 520 1c3y_A) ( 3221 1k8u_A) 0.3880 0.3880 5.6812 ( 1 4 6) 0 0.3880 0.3880 6 6 ( 520 1c3y_A) ( 3227 1k94_A) 0.8317 0.5553 5.7253 ( 0 8 10) 0 0.8317 0.5553 6 9 ( 520 1c3y_A) ( 3816 1m39_A) 0.4667 0.4455 5.9274 ( 1 5 6) 0 0.6665 0.5713 6 7 ( 520 1c3y_A) ( 3829 1m45_A) 0.6666 0.3333 3.8284 ( 0 5 6) 0 0.6666 0.3333 6 12 ( 520 1c3y_A) ( 4437 1nya_A) 0.8325 0.4999 4.8737 ( 0 8 10) 0 0.8325 0.4999 6 10 ( 520 1c3y_A) ( 4715 1omr_A) 0.7246 0.3549 6.5960 ( 1 9 10) 0 0.7246 0.3549 6 14 ( 520 1c3y_A) ( 4740 1ooh_A) 0.6859 0.6859 3.5360 ( 1 8 10) 0 0.6859 0.6859 6 6 ( 520 1c3y_A) ( 4870 1p28_A) 0.7258 0.7258 4.4827 ( 1 9 10) 0 0.7258 0.7258 6 6 ( 520 1c3y_A) ( 5465 1qv0_A) 0.6853 0.5271 5.9764 ( 1 8 10) 0 0.8311 0.5553 6 9 ( 520 1c3y_A) ( 5565 1r5r_A) 0.9994 0.8569 3.5724 ( 0 12 15) 0 0.9994 0.8569 6 7 ( 520 1c3y_A) ( 5774 1s6c_A) 0.8292 0.4997 7.2139 ( 0 9 10) 0 0.8292 0.4997 6 10 ( 520 1c3y_A) ( 5845 1sra ) 0.6665 0.5713 4.4314 ( 0 5 6) 0 0.6665 0.5713 6 7 ( 520 1c3y_A) ( 6021 1uhn_A) 0.6857 0.4434 4.8879 ( 1 8 10) 0 0.6857 0.4434 6 11 ( 520 1c3y_A) ( 6327 1wdc_B) 0.6666 0.5000 3.7773 ( 0 5 6) 0 0.6666 0.5000 6 8 ( 520 1c3y_A) ( 6416 2cbl_A) 0.6665 0.5713 4.4300 ( 0 4 6) 0 0.6665 0.5713 6 7 ( 520 1c3y_A) ( 6521 2pvb_A) 0.6665 0.6665 4.0199 ( 0 5 6) 0 0.8322 0.8322 6 6 ( 520 1c3y_A) ( 6527 2sas ) 0.8327 0.5555 4.5563 ( 0 7 10) 0 0.8327 0.5555 6 9 ( 520 1c3y_A) ( 6528 2scp_A) 0.6666 0.4444 3.5823 ( 0 5 6) 0 0.6666 0.5106 6 9 -------------------------------------------------------------------------------------------------------------------------