------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5465 1qv0_A) ( 152 1alv_A) 0.4444 0.4444 4.6368 ( 0 5 6) 0 0.4444 0.4444 9 9 ( 5465 1qv0_A) ( 209 1aui_B) 0.5555 0.5555 4.2729 ( 0 9 10) 0 0.5555 0.5555 9 9 ( 5465 1qv0_A) ( 520 1c3y_A) 0.5271 0.6853 5.9764 ( 1 8 10) 0 0.5553 0.8311 9 6 ( 5465 1qv0_A) ( 835 1dgu_A) 0.6370 0.5818 5.1029 ( 1 10 15) 0 0.6370 0.5818 9 10 ( 5465 1qv0_A) ( 917 1dqe_A) 0.5270 0.6309 6.4903 ( 1 8 10) 0 0.5552 0.7132 9 7 ( 5465 1qv0_A) ( 1142 1eg3_A) 0.5271 0.5773 5.1738 ( 1 8 10) 0 0.5547 0.6234 9 8 ( 5465 1qv0_A) ( 1143 1eg3_A) 0.4444 0.6664 4.8827 ( 0 6 6) 0 0.4444 0.6664 9 6 ( 5465 1qv0_A) ( 1306 1exr_A) 0.4444 0.5711 5.9634 ( 0 5 6) 0 0.4444 0.5711 9 7 ( 5465 1qv0_A) ( 1508 1fi6_A) 0.4444 0.6666 3.1455 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 5465 1qv0_A) ( 2262 1hqv_A) 0.4444 0.5000 3.8865 ( 0 6 6) 0 0.5548 0.6237 9 8 ( 5465 1qv0_A) ( 2512 1ij5_A) 0.5555 0.3571 4.7279 ( 0 8 10) 0 0.6503 0.4773 9 14 ( 5465 1qv0_A) ( 2808 1jba_A) 0.5555 0.4999 4.5308 ( 0 8 10) 0 0.6661 0.6229 9 10 ( 5465 1qv0_A) ( 2851 1jfk_A) 0.5543 0.4164 8.8277 ( 0 6 10) 0 0.5543 0.4164 9 12 ( 5465 1qv0_A) ( 3221 1k8u_A) 0.3937 0.4667 5.3363 ( 1 5 6) 0 0.3937 0.4667 9 6 ( 5465 1qv0_A) ( 3227 1k94_A) 0.4444 0.4444 5.5496 ( 0 5 6) 0 0.5107 0.5107 9 9 ( 5465 1qv0_A) ( 3816 1m39_A) 0.4161 0.4918 4.2767 ( 1 6 6) 0 0.4444 0.5712 9 7 ( 5465 1qv0_A) ( 3829 1m45_A) 0.5546 0.4164 8.3243 ( 0 8 10) 0 0.6439 0.4943 9 12 ( 5465 1qv0_A) ( 4437 1nya_A) 0.8840 0.7971 4.3042 ( 1 24 28) 0 0.8840 0.7971 9 10 ( 5465 1qv0_A) ( 4715 1omr_A) 0.5547 0.3571 7.9854 ( 0 7 10) 0 0.5547 0.3571 9 14 ( 5465 1qv0_A) ( 4740 1ooh_A) 0.4444 0.6665 4.1715 ( 0 5 6) 0 0.5109 0.6665 9 6 ( 5465 1qv0_A) ( 4870 1p28_A) 0.5553 0.8317 5.7191 ( 0 8 10) 0 0.5553 0.8317 9 6 ( 5465 1qv0_A) ( 5465 1qv0_A) 1.0000 1.0000 0.0000 ( 0 28 36) 0 1.0000 1.0000 9 9 ( 5465 1qv0_A) ( 5565 1r5r_A) 0.5554 0.7136 5.5571 ( 0 8 10) 0 0.5554 0.7136 9 7 ( 5465 1qv0_A) ( 5774 1s6c_A) 0.6500 0.5899 7.8859 ( 1 12 15) 0 0.6656 0.5994 9 10 ( 5465 1qv0_A) ( 5845 1sra ) 0.6662 0.8556 5.4534 ( 0 11 15) 0 0.7736 0.9857 9 7 ( 5465 1qv0_A) ( 6021 1uhn_A) 0.5553 0.4545 5.7896 ( 0 7 10) 0 0.6578 0.5421 9 11 ( 5465 1qv0_A) ( 6327 1wdc_B) 0.5492 0.6137 13.4202 ( 0 8 10) 0 0.5523 0.6137 9 8 ( 5465 1qv0_A) ( 6416 2cbl_A) 0.4444 0.5714 2.3418 ( 0 5 6) 0 0.4444 0.5714 9 7 ( 5465 1qv0_A) ( 6521 2pvb_A) 0.5367 0.7246 6.6130 ( 1 9 10) 0 0.5555 0.8330 9 6 ( 5465 1qv0_A) ( 6527 2sas ) 0.8820 0.8820 4.8086 ( 1 22 28) 0 0.8820 0.8820 9 9 ( 5465 1qv0_A) ( 6528 2scp_A) 0.8877 0.8877 4.8602 ( 0 21 28) 0 0.8877 0.8877 9 9 -------------------------------------------------------------------------------------------------------------------------