------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6528 2scp_A) ( 152 1alv_A) 0.4444 0.4444 4.9050 ( 0 6 6) 0 0.4444 0.4444 9 9 ( 6528 2scp_A) ( 209 1aui_B) 0.5555 0.5555 4.6047 ( 0 10 10) 0 0.5555 0.5555 9 9 ( 6528 2scp_A) ( 520 1c3y_A) 0.4444 0.6666 3.5823 ( 0 5 6) 0 0.5106 0.6666 9 6 ( 6528 2scp_A) ( 835 1dgu_A) 0.5553 0.4999 5.7716 ( 0 8 10) 0 0.5553 0.4999 9 10 ( 6528 2scp_A) ( 917 1dqe_A) 0.5553 0.7136 5.6663 ( 0 9 10) 0 0.5553 0.7136 9 7 ( 6528 2scp_A) ( 1142 1eg3_A) 0.4444 0.4999 5.3711 ( 0 4 6) 0 0.5270 0.5770 9 8 ( 6528 2scp_A) ( 1143 1eg3_A) 0.5548 0.8278 7.7958 ( 0 10 10) 0 0.5552 0.8307 9 6 ( 6528 2scp_A) ( 1306 1exr_A) 0.4444 0.5713 5.2098 ( 0 5 6) 0 0.4444 0.5713 9 7 ( 6528 2scp_A) ( 1508 1fi6_A) 0.4444 0.6666 3.8161 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 6528 2scp_A) ( 2262 1hqv_A) 0.5534 0.6211 10.2478 ( 0 7 10) 0 0.5534 0.6211 9 8 ( 6528 2scp_A) ( 2512 1ij5_A) 0.4439 0.2856 9.7128 ( 0 4 6) 0 0.6540 0.4271 9 14 ( 6528 2scp_A) ( 2808 1jba_A) 0.6663 0.5998 5.2452 ( 0 13 15) 0 0.6663 0.5998 9 10 ( 6528 2scp_A) ( 2851 1jfk_A) 0.4444 0.3333 4.1287 ( 0 4 6) 0 0.4444 0.3333 9 12 ( 6528 2scp_A) ( 3221 1k8u_A) 0.3936 0.4667 6.3650 ( 1 5 6) 0 0.3936 0.4667 9 6 ( 6528 2scp_A) ( 3227 1k94_A) 0.4444 0.4444 4.8621 ( 0 6 6) 0 0.4444 0.4444 9 9 ( 6528 2scp_A) ( 3816 1m39_A) 0.4161 0.4917 4.7564 ( 1 6 6) 0 0.5270 0.6310 9 7 ( 6528 2scp_A) ( 3829 1m45_A) 0.4444 0.3333 3.8685 ( 0 6 6) 0 0.5552 0.4166 9 12 ( 6528 2scp_A) ( 4437 1nya_A) 0.8835 0.7968 3.9657 ( 1 23 28) 0 0.8835 0.7968 9 10 ( 6528 2scp_A) ( 4715 1omr_A) 0.6551 0.4273 5.6766 ( 1 13 15) 0 0.6551 0.4273 9 14 ( 6528 2scp_A) ( 4740 1ooh_A) 0.4444 0.6665 4.5081 ( 0 5 6) 0 0.4444 0.6665 9 6 ( 6528 2scp_A) ( 4870 1p28_A) 0.4444 0.6664 4.6943 ( 0 6 6) 0 0.4444 0.6664 9 6 ( 6528 2scp_A) ( 5465 1qv0_A) 0.8877 0.8877 4.8602 ( 0 21 28) 0 0.8877 0.8877 9 9 ( 6528 2scp_A) ( 5565 1r5r_A) 0.4444 0.5713 4.3249 ( 0 6 6) 0 0.4444 0.5713 9 7 ( 6528 2scp_A) ( 5774 1s6c_A) 0.6663 0.5998 5.2102 ( 0 13 15) 0 0.6663 0.5998 9 10 ( 6528 2scp_A) ( 5845 1sra ) 0.7761 0.9943 6.2315 ( 0 17 21) 0 0.7761 0.9943 9 7 ( 6528 2scp_A) ( 6021 1uhn_A) 0.6507 0.5394 6.8465 ( 1 12 15) 0 0.6507 0.5394 9 11 ( 6528 2scp_A) ( 6327 1wdc_B) 0.5552 0.6244 6.2970 ( 0 8 10) 0 0.5552 0.6244 9 8 ( 6528 2scp_A) ( 6416 2cbl_A) 0.4444 0.5714 4.0396 ( 0 5 6) 0 0.4444 0.5714 9 7 ( 6528 2scp_A) ( 6521 2pvb_A) 0.5545 0.8254 8.5383 ( 0 8 10) 0 0.5552 0.8307 9 6 ( 6528 2scp_A) ( 6527 2sas ) 0.8257 0.8257 4.4672 ( 3 29 36) 0 0.8257 0.8257 9 9 ( 6528 2scp_A) ( 6528 2scp_A) 1.0000 1.0000 0.0000 ( 0 31 36) 0 1.0000 1.0000 9 9 -------------------------------------------------------------------------------------------------------------------------