------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2162 1hbx_G) ( 288 1b4a_A) 0.3557 0.3948 4.7925 ( 2 8 10) 0 0.3557 0.3948 11 6 ( 2162 1hbx_G) ( 328 1b9m_A) 0.4787 0.5043 6.6001 ( 2 12 15) 0 0.4787 0.5043 11 10 ( 2162 1hbx_G) ( 410 1bja_A) 0.4931 0.6050 4.9664 ( 2 13 15) 0 0.4931 0.6739 11 7 ( 2162 1hbx_G) ( 424 1bm9_A) 0.4781 0.5799 9.5574 ( 2 12 15) 0 0.4781 0.6856 11 6 ( 2162 1hbx_G) ( 509 1c20_A) 0.3419 0.4204 6.3986 ( 1 5 6) 0 0.3419 0.4204 11 8 ( 2162 1hbx_G) ( 576 1cf7_A) 0.5398 0.9060 3.2707 ( 1 12 15) 0 0.5398 0.9060 11 6 ( 2162 1hbx_G) ( 904 1dp7_P) 0.4931 0.6050 4.9382 ( 2 13 15) 0 0.4931 0.6570 11 7 ( 2162 1hbx_G) ( 997 1e17_A) 0.4474 0.7258 4.4801 ( 1 9 10) 0 0.4474 0.7258 11 6 ( 2162 1hbx_G) ( 1461 1fc3_A) nil ( 2162 1hbx_G) ( 1576 1fnn_A) 0.4545 0.7142 3.6028 ( 0 8 10) 0 0.4545 0.7142 11 7 ( 2162 1hbx_G) ( 1595 1fp1_D) 0.4931 0.5811 4.8946 ( 2 13 15) 0 0.4931 0.6030 11 8 ( 2162 1hbx_G) ( 1597 1fp2_A) 0.5413 0.7303 4.0922 ( 1 13 15) 0 0.5413 0.7303 11 8 ( 2162 1hbx_G) ( 1664 1fzp_B) nil ( 2162 1hbx_G) ( 1973 1gvj_A) 0.7008 0.7008 1.9521 ( 2 23 28) 0 0.7008 0.7008 11 11 ( 2162 1hbx_G) ( 1999 1gxq_A) 0.4545 0.5555 3.7096 ( 0 9 10) 0 0.4545 0.5555 11 9 ( 2162 1hbx_G) ( 2162 1hbx_G) 1.0000 1.0000 0.0000 ( 0 50 55) 0 1.0000 1.0000 11 11 ( 2162 1hbx_G) ( 2224 1hkq_A) 0.6361 0.6996 4.8537 ( 0 14 21) 0 0.6361 0.6996 11 10 ( 2162 1hbx_G) ( 2278 1hsj_A) 0.5397 0.8084 4.4940 ( 1 12 15) 0 0.5397 0.8084 11 7 ( 2162 1hbx_G) ( 2410 1i5z_A) 0.4789 0.5820 2.8352 ( 2 12 15) 0 0.4789 0.6858 11 6 ( 2162 1hbx_G) ( 2482 1ig6_A) 0.3522 0.5284 7.5151 ( 1 6 6) 0 0.3522 0.5284 11 6 ( 2162 1hbx_G) ( 2544 1in4_A) 0.4932 0.6051 3.8547 ( 2 13 15) 0 0.4932 0.6051 11 7 ( 2162 1hbx_G) ( 2703 1j1v_A) 0.3630 0.6547 12.5626 ( 0 5 6) 0 0.3630 0.6547 11 6 ( 2162 1hbx_G) ( 2862 1jgs_A) 0.4930 0.5806 6.9392 ( 2 13 15) 0 0.4930 0.5806 11 8 ( 2162 1hbx_G) ( 2871 1jhg_A) 0.2724 0.2965 15.3914 ( 2 6 6) 0 0.2724 0.2965 11 6 ( 2162 1hbx_G) ( 3237 1ka8_A) 0.4544 0.6241 7.0418 ( 0 8 10) 0 0.4544 0.6241 11 8 ( 2162 1hbx_G) ( 3296 1kgs_A) 0.3418 0.3935 8.6672 ( 1 5 6) 0 0.3418 0.3935 11 9 ( 2162 1hbx_G) ( 3338 1kkx_A) 0.3630 0.6542 12.6990 ( 0 4 6) 0 0.3630 0.6542 11 6 ( 2162 1hbx_G) ( 3438 1ku9_A) 0.4474 0.5931 3.5277 ( 1 9 10) 0 0.4474 0.5931 11 8 ( 2162 1hbx_G) ( 3604 1ldj_A) 0.5390 0.8959 8.2343 ( 1 12 15) 0 0.5390 0.8959 11 6 ( 2162 1hbx_G) ( 3639 1lj9_A) 0.4930 0.5808 6.3610 ( 2 13 15) 0 0.4930 0.5808 11 8 ( 2162 1hbx_G) ( 3681 1lnw_A) 0.4931 0.5809 6.0548 ( 2 13 15) 0 0.4931 0.5809 11 8 ( 2162 1hbx_G) ( 3746 1lva_A) 0.4545 0.8331 3.6019 ( 0 8 10) 0 0.4545 0.8331 11 6 ( 2162 1hbx_G) ( 3748 1lva_A) 0.4604 0.5378 6.4479 ( 2 11 15) 0 0.4604 0.8330 11 6 ( 2162 1hbx_G) ( 3934 1mij_A) nil ( 2162 1hbx_G) ( 3960 1mkm_A) 0.3636 0.6666 3.8853 ( 0 4 6) 0 0.3636 0.6666 11 6 ( 2162 1hbx_G) ( 4082 1mzb_A) 0.3419 0.3671 5.7206 ( 1 5 6) 0 0.5729 0.6074 11 10 ( 2162 1hbx_G) ( 4537 1o7f_A) 0.5454 0.6666 3.8113 ( 0 13 15) 0 0.5454 0.6666 11 9 ( 2162 1hbx_G) ( 4697 1okr_A) 0.4545 0.6249 4.1032 ( 0 9 10) 0 0.4545 0.6249 11 8 ( 2162 1hbx_G) ( 4714 1omi_A) 0.6959 0.7517 4.6949 ( 2 22 28) 0 0.6959 0.7517 11 10 ( 2162 1hbx_G) ( 4745 1opc ) 0.3522 0.4159 8.5452 ( 1 6 6) 0 0.3522 0.4159 11 9 ( 2162 1hbx_G) ( 4840 1oyw_A) 0.3636 0.4000 4.2873 ( 0 5 6) 0 0.3636 0.4000 11 10 ( 2162 1hbx_G) ( 4872 1p2f_A) 0.3418 0.4202 8.0558 ( 1 5 6) 0 0.3522 0.4529 11 8 ( 2162 1hbx_G) ( 4894 1p4x_A) 0.5938 0.7233 6.7680 ( 2 17 21) 0 0.5938 0.7233 11 8 ( 2162 1hbx_G) ( 4895 1p4x_A) 0.5397 0.8080 5.2440 ( 1 12 15) 0 0.5397 0.8080 11 7 ( 2162 1hbx_G) ( 4986 1pdn_C) 0.3192 0.3670 7.9419 ( 1 4 6) 0 0.3192 0.3670 11 8 ( 2162 1hbx_G) ( 5074 1pp7_U) 0.6960 0.7520 3.7901 ( 2 22 28) 0 0.6960 0.7520 11 10 ( 2162 1hbx_G) ( 5110 1pue_E) 0.6364 0.9999 2.0235 ( 0 18 21) 0 0.6364 0.9999 11 7 ( 2162 1hbx_G) ( 5180 1q1h_A) 0.4434 0.6314 4.6676 ( 1 8 10) 0 0.4434 0.6314 11 7 ( 2162 1hbx_G) ( 5508 1qzz_A) nil ( 2162 1hbx_G) ( 5612 1rep_C) 0.6323 0.6323 4.5860 ( 1 16 21) 0 0.6323 0.6323 11 11 ( 2162 1hbx_G) ( 5613 1rep_C) 0.4363 0.5525 4.9753 ( 1 7 10) 0 0.4363 0.5525 11 8 ( 2162 1hbx_G) ( 5750 1s29_A) 0.5397 0.7234 4.9463 ( 1 12 15) 0 0.5397 0.7234 11 8 ( 2162 1hbx_G) ( 5764 1s3j_A) 0.6016 0.6956 5.5158 ( 2 18 21) 0 0.6016 0.6956 11 9 ( 2162 1hbx_G) ( 5776 1s7a_A) 0.3636 0.6662 5.3971 ( 0 5 6) 0 0.3636 0.6662 11 6 ( 2162 1hbx_G) ( 5829 1smt_A) 0.5412 0.8201 4.7502 ( 1 13 15) 0 0.5412 0.8201 11 7 ( 2162 1hbx_G) ( 5959 1ub9_A) 0.5847 0.6999 5.9328 ( 2 16 21) 0 0.5847 0.7140 11 8 ( 2162 1hbx_G) ( 5972 1ucr_A) 0.4545 0.8329 4.1801 ( 0 8 10) 0 0.4545 0.8329 11 6 ( 2162 1hbx_G) ( 6025 1uhw_A) 0.3523 0.5287 5.7867 ( 1 6 6) 0 0.3523 0.5287 11 6 ( 2162 1hbx_G) ( 6346 1xgs_A) 0.3635 0.6640 8.5489 ( 0 4 6) 0 0.3635 0.6640 11 6 ( 2162 1hbx_G) ( 6450 2fok_A) 0.5413 0.5933 3.5742 ( 1 13 15) 0 0.5413 0.5933 11 10 ( 2162 1hbx_G) ( 6451 2fok_A) 0.3636 0.3636 6.6384 ( 0 4 6) 0 0.4433 0.4433 11 11 ( 2162 1hbx_G) ( 6476 2hts ) 0.4789 0.5686 2.8399 ( 2 12 15) 0 0.4789 0.5686 11 7 ( 2162 1hbx_G) ( 6480 2irf_G) 0.6362 0.9989 4.1320 ( 0 18 21) 0 0.6362 0.9989 11 7 -------------------------------------------------------------------------------------------------------------------------