------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3338 1kkx_A) ( 288 1b4a_A) nil ( 3338 1kkx_A) ( 328 1b9m_A) 0.6644 0.3998 8.2511 ( 0 4 6) 0 0.6644 0.3998 6 10 ( 3338 1kkx_A) ( 410 1bja_A) 0.6665 0.5714 4.2166 ( 0 5 6) 0 0.6665 0.5714 6 7 ( 3338 1kkx_A) ( 424 1bm9_A) 0.4652 0.4652 11.8246 ( 1 5 6) 0 0.4652 0.4652 6 6 ( 3338 1kkx_A) ( 509 1c20_A) 0.9275 0.7305 3.0640 ( 1 13 15) 0 0.9275 0.7305 6 8 ( 3338 1kkx_A) ( 576 1cf7_A) nil ( 3338 1kkx_A) ( 904 1dp7_P) nil ( 3338 1kkx_A) ( 997 1e17_A) 0.4666 0.4666 7.1543 ( 1 5 6) 0 0.6664 0.6664 6 6 ( 3338 1kkx_A) ( 1461 1fc3_A) 0.8318 0.6246 5.6524 ( 0 9 10) 0 0.8318 0.6246 6 8 ( 3338 1kkx_A) ( 1576 1fnn_A) 0.4660 0.4449 9.8740 ( 1 5 6) 0 0.4660 0.4449 6 7 ( 3338 1kkx_A) ( 1595 1fp1_D) 0.2488 0.2462 5.7046 ( 2 5 6) 0 0.2488 0.2462 6 8 ( 3338 1kkx_A) ( 1597 1fp2_A) nil ( 3338 1kkx_A) ( 1664 1fzp_B) nil ( 3338 1kkx_A) ( 1973 1gvj_A) 0.4657 0.3417 10.6462 ( 1 5 6) 0 0.4657 0.3417 6 11 ( 3338 1kkx_A) ( 1999 1gxq_A) 0.2488 0.2441 5.0120 ( 2 5 6) 0 0.2488 0.2441 6 9 ( 3338 1kkx_A) ( 2162 1hbx_G) 0.6542 0.3630 12.6990 ( 0 4 6) 0 0.6542 0.3630 6 11 ( 3338 1kkx_A) ( 2224 1hkq_A) 0.4667 0.3671 5.6063 ( 1 5 6) 0 0.4667 0.3671 6 10 ( 3338 1kkx_A) ( 2278 1hsj_A) 0.6661 0.5712 5.7216 ( 0 5 6) 0 0.6661 0.5712 6 7 ( 3338 1kkx_A) ( 2410 1i5z_A) nil ( 3338 1kkx_A) ( 2482 1ig6_A) 0.4665 0.4665 7.6052 ( 1 5 6) 0 0.4665 0.4665 6 6 ( 3338 1kkx_A) ( 2544 1in4_A) 0.4668 0.4455 3.2592 ( 1 5 6) 0 0.4668 0.4455 6 7 ( 3338 1kkx_A) ( 2703 1j1v_A) 0.7242 0.7242 7.0976 ( 1 9 10) 0 0.7242 0.7242 6 6 ( 3338 1kkx_A) ( 2862 1jgs_A) 0.6659 0.4998 6.2832 ( 0 5 6) 0 0.6659 0.4998 6 8 ( 3338 1kkx_A) ( 2871 1jhg_A) 0.6333 0.6333 16.5899 ( 0 5 6) 0 0.6333 0.6333 6 6 ( 3338 1kkx_A) ( 3237 1ka8_A) nil ( 3338 1kkx_A) ( 3296 1kgs_A) nil ( 3338 1kkx_A) ( 3338 1kkx_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 3338 1kkx_A) ( 3438 1ku9_A) 0.6660 0.4998 5.9939 ( 0 5 6) 0 0.6660 0.4998 6 8 ( 3338 1kkx_A) ( 3604 1ldj_A) nil ( 3338 1kkx_A) ( 3639 1lj9_A) 0.6637 0.4993 8.7958 ( 0 4 6) 0 0.6637 0.4993 6 8 ( 3338 1kkx_A) ( 3681 1lnw_A) 0.6635 0.4992 8.9653 ( 0 4 6) 0 0.6635 0.4992 6 8 ( 3338 1kkx_A) ( 3746 1lva_A) 0.1996 0.1996 9.8278 ( 2 4 6) 0 0.1996 0.1996 6 6 ( 3338 1kkx_A) ( 3748 1lva_A) 0.3878 0.3878 8.9834 ( 1 4 6) 0 0.3878 0.3878 6 6 ( 3338 1kkx_A) ( 3934 1mij_A) 0.6624 0.6624 9.6135 ( 0 4 6) 0 0.6651 0.6651 6 6 ( 3338 1kkx_A) ( 3960 1mkm_A) nil ( 3338 1kkx_A) ( 4082 1mzb_A) 0.6664 0.4000 4.6601 ( 0 5 6) 0 0.6664 0.4000 6 10 ( 3338 1kkx_A) ( 4537 1o7f_A) nil ( 3338 1kkx_A) ( 4697 1okr_A) nil ( 3338 1kkx_A) ( 4714 1omi_A) 0.2488 0.2413 8.9228 ( 2 5 6) 0 0.2488 0.2413 6 10 ( 3338 1kkx_A) ( 4745 1opc ) nil ( 3338 1kkx_A) ( 4840 1oyw_A) 0.6660 0.3999 6.0488 ( 0 5 6) 0 0.6660 0.3999 6 10 ( 3338 1kkx_A) ( 4872 1p2f_A) nil ( 3338 1kkx_A) ( 4894 1p4x_A) 0.6658 0.4998 6.3863 ( 0 5 6) 0 0.6658 0.4998 6 8 ( 3338 1kkx_A) ( 4895 1p4x_A) 0.6659 0.5711 6.3029 ( 0 5 6) 0 0.6659 0.5711 6 7 ( 3338 1kkx_A) ( 4986 1pdn_C) nil ( 3338 1kkx_A) ( 5074 1pp7_U) 0.4664 0.3670 8.2623 ( 1 5 6) 0 0.4664 0.3670 6 10 ( 3338 1kkx_A) ( 5110 1pue_E) nil ( 3338 1kkx_A) ( 5180 1q1h_A) 0.6663 0.5713 5.2189 ( 0 4 6) 0 0.6663 0.5713 6 7 ( 3338 1kkx_A) ( 5508 1qzz_A) 0.6655 0.6655 6.9909 ( 0 4 6) 0 0.6655 0.6655 6 6 ( 3338 1kkx_A) ( 5612 1rep_C) 0.6658 0.3636 6.3624 ( 0 4 6) 0 0.6658 0.3636 6 11 ( 3338 1kkx_A) ( 5613 1rep_C) 0.6665 0.5000 4.1707 ( 0 4 6) 0 0.6665 0.5000 6 8 ( 3338 1kkx_A) ( 5750 1s29_A) 0.3879 0.3671 6.6800 ( 1 4 6) 0 0.3879 0.3671 6 8 ( 3338 1kkx_A) ( 5764 1s3j_A) 0.6483 0.4419 14.0704 ( 0 4 6) 0 0.6483 0.4419 6 9 ( 3338 1kkx_A) ( 5776 1s7a_A) nil ( 3338 1kkx_A) ( 5829 1smt_A) 0.6655 0.5709 6.9592 ( 0 4 6) 0 0.6655 0.5709 6 7 ( 3338 1kkx_A) ( 5959 1ub9_A) nil ( 3338 1kkx_A) ( 5972 1ucr_A) nil ( 3338 1kkx_A) ( 6025 1uhw_A) 0.6623 0.6623 9.7128 ( 0 4 6) 0 0.6623 0.6623 6 6 ( 3338 1kkx_A) ( 6346 1xgs_A) nil ( 3338 1kkx_A) ( 6450 2fok_A) 0.1665 0.1654 7.4703 ( 3 5 6) 0 0.1665 0.1654 6 10 ( 3338 1kkx_A) ( 6451 2fok_A) nil ( 3338 1kkx_A) ( 6476 2hts ) 0.6657 0.5710 6.6991 ( 0 4 6) 0 0.6657 0.5710 6 7 ( 3338 1kkx_A) ( 6480 2irf_G) nil -------------------------------------------------------------------------------------------------------------------------