------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4697 1okr_A) ( 288 1b4a_A) 0.4530 0.5287 6.1669 ( 1 6 6) 0 0.4530 0.5287 8 6 ( 4697 1okr_A) ( 328 1b9m_A) 0.7448 0.6470 5.9286 ( 2 18 21) 0 0.7448 0.6470 8 10 ( 4697 1okr_A) ( 410 1bja_A) 0.6032 0.6741 2.3309 ( 1 10 10) 0 0.6032 0.6741 8 7 ( 4697 1okr_A) ( 424 1bm9_A) 0.6077 0.6631 4.6560 ( 2 14 15) 0 0.6077 0.6631 8 6 ( 4697 1okr_A) ( 509 1c20_A) 0.4996 0.4996 7.7207 ( 0 5 6) 0 0.4996 0.4996 8 8 ( 4697 1okr_A) ( 576 1cf7_A) 0.6032 0.7552 2.0518 ( 1 10 10) 0 0.6032 0.7552 8 6 ( 4697 1okr_A) ( 904 1dp7_P) 0.4589 0.4738 3.5534 ( 2 10 10) 0 0.4589 0.4738 8 7 ( 4697 1okr_A) ( 997 1e17_A) 0.6032 0.7551 3.3512 ( 1 10 10) 0 0.6032 0.7551 8 6 ( 4697 1okr_A) ( 1461 1fc3_A) 0.4982 0.4982 11.1062 ( 0 5 6) 0 0.4982 0.4982 8 8 ( 4697 1okr_A) ( 1576 1fnn_A) 0.7351 0.8290 4.0590 ( 1 14 15) 0 0.7351 0.8290 8 7 ( 4697 1okr_A) ( 1595 1fp1_D) 0.6077 0.6077 4.8243 ( 2 14 15) 0 0.6077 0.6077 8 8 ( 4697 1okr_A) ( 1597 1fp2_A) 0.7347 0.7347 5.3025 ( 1 14 15) 0 0.7347 0.7347 8 8 ( 4697 1okr_A) ( 1664 1fzp_B) nil ( 4697 1okr_A) ( 1973 1gvj_A) 0.7344 0.5422 5.7466 ( 1 14 15) 0 0.7344 0.5422 8 11 ( 4697 1okr_A) ( 1999 1gxq_A) 0.6032 0.5430 3.2290 ( 1 10 10) 0 0.6032 0.5430 8 9 ( 4697 1okr_A) ( 2162 1hbx_G) 0.6249 0.4545 4.1032 ( 0 9 10) 0 0.6249 0.4545 8 11 ( 4697 1okr_A) ( 2224 1hkq_A) 0.4995 0.3999 7.8695 ( 0 4 6) 0 0.7236 0.5909 8 10 ( 4697 1okr_A) ( 2278 1hsj_A) 0.6249 0.7142 3.6195 ( 0 9 10) 0 0.6249 0.7142 8 7 ( 4697 1okr_A) ( 2410 1i5z_A) 0.4240 0.4409 3.0338 ( 2 9 10) 0 0.4240 0.4653 8 6 ( 4697 1okr_A) ( 2482 1ig6_A) 0.4975 0.6562 12.1306 ( 0 5 6) 0 0.4975 0.6562 8 6 ( 4697 1okr_A) ( 2544 1in4_A) 0.6076 0.6382 5.3001 ( 2 14 15) 0 0.6076 0.6741 8 7 ( 4697 1okr_A) ( 2703 1j1v_A) 0.4523 0.5271 10.3593 ( 1 6 6) 0 0.4523 0.5271 8 6 ( 4697 1okr_A) ( 2862 1jgs_A) 0.7246 0.7246 4.4141 ( 2 17 21) 0 0.7246 0.7246 8 8 ( 4697 1okr_A) ( 2871 1jhg_A) 0.2910 0.2970 7.5261 ( 2 6 6) 0 0.2910 0.2970 8 6 ( 4697 1okr_A) ( 3237 1ka8_A) 0.4528 0.4528 8.1812 ( 1 6 6) 0 0.4528 0.4528 8 8 ( 4697 1okr_A) ( 3296 1kgs_A) 0.5774 0.5272 3.3278 ( 1 8 10) 0 0.5774 0.5272 8 9 ( 4697 1okr_A) ( 3338 1kkx_A) nil ( 4697 1okr_A) ( 3438 1ku9_A) 0.6032 0.6032 2.2843 ( 1 10 10) 0 0.6032 0.6032 8 8 ( 4697 1okr_A) ( 3604 1ldj_A) 0.6022 0.7523 7.4985 ( 1 10 10) 0 0.6022 0.7523 8 6 ( 4697 1okr_A) ( 3639 1lj9_A) 0.6078 0.6078 3.8435 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4697 1okr_A) ( 3681 1lnw_A) 0.6078 0.6078 3.2830 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4697 1okr_A) ( 3746 1lva_A) 0.5932 0.7261 2.2050 ( 1 9 10) 0 0.5932 0.7261 8 6 ( 4697 1okr_A) ( 3748 1lva_A) 0.5931 0.7260 3.4087 ( 1 9 10) 0 0.5931 0.7260 8 6 ( 4697 1okr_A) ( 3934 1mij_A) 0.4196 0.4653 11.5702 ( 1 5 6) 0 0.4196 0.4653 8 6 ( 4697 1okr_A) ( 3960 1mkm_A) 0.6032 0.7552 3.1688 ( 1 10 10) 0 0.6032 0.7552 8 6 ( 4697 1okr_A) ( 4082 1mzb_A) 0.5932 0.4888 2.3527 ( 1 9 10) 0 0.5932 0.4888 8 10 ( 4697 1okr_A) ( 4537 1o7f_A) 0.6031 0.5430 3.8404 ( 1 10 10) 0 0.6031 0.5430 8 9 ( 4697 1okr_A) ( 4697 1okr_A) 1.0000 1.0000 0.0000 ( 0 25 28) 0 1.0000 1.0000 8 8 ( 4697 1okr_A) ( 4714 1omi_A) 0.5931 0.4887 4.4334 ( 1 9 10) 0 0.5931 0.5233 8 10 ( 4697 1okr_A) ( 4745 1opc ) 0.6250 0.5555 3.1105 ( 0 10 10) 0 0.6250 0.5555 8 9 ( 4697 1okr_A) ( 4840 1oyw_A) 0.6077 0.5385 4.8199 ( 2 14 15) 0 0.6077 0.5385 8 10 ( 4697 1okr_A) ( 4872 1p2f_A) 0.5931 0.5931 2.8129 ( 1 9 10) 0 0.5931 0.5931 8 8 ( 4697 1okr_A) ( 4894 1p4x_A) 0.6078 0.6078 3.7887 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4697 1okr_A) ( 4895 1p4x_A) 0.5812 0.6052 3.3942 ( 2 13 15) 0 0.5812 0.6052 8 7 ( 4697 1okr_A) ( 4986 1pdn_C) 0.4876 0.4876 18.2589 ( 0 6 6) 0 0.4876 0.4876 8 8 ( 4697 1okr_A) ( 5074 1pp7_U) 0.4528 0.3822 8.2818 ( 1 6 6) 0 0.4528 0.3822 8 10 ( 4697 1okr_A) ( 5110 1pue_E) 0.6030 0.6739 4.7797 ( 1 10 10) 0 0.6030 0.6739 8 7 ( 4697 1okr_A) ( 5180 1q1h_A) 0.5932 0.6570 1.9492 ( 1 9 10) 0 0.7304 0.8206 8 7 ( 4697 1okr_A) ( 5508 1qzz_A) 0.4999 0.6663 5.1451 ( 0 5 6) 0 0.4999 0.6663 8 6 ( 4697 1okr_A) ( 5612 1rep_C) 0.7300 0.5412 5.1073 ( 1 13 15) 0 0.7303 0.5413 8 11 ( 4697 1okr_A) ( 5613 1rep_C) nil ( 4697 1okr_A) ( 5750 1s29_A) 0.5928 0.5928 6.1117 ( 1 9 10) 0 0.5928 0.5928 8 8 ( 4697 1okr_A) ( 5764 1s3j_A) 0.6078 0.5737 2.9584 ( 2 14 15) 0 0.6078 0.5737 8 9 ( 4697 1okr_A) ( 5776 1s7a_A) 0.4998 0.6659 6.1691 ( 0 5 6) 0 0.4998 0.6659 8 6 ( 4697 1okr_A) ( 5829 1smt_A) 0.7352 0.8293 3.1043 ( 1 14 15) 0 0.7352 0.8293 8 7 ( 4697 1okr_A) ( 5959 1ub9_A) 0.5812 0.5812 2.6084 ( 2 13 15) 0 0.5812 0.5812 8 8 ( 4697 1okr_A) ( 5972 1ucr_A) 0.5932 0.7261 2.3735 ( 1 9 10) 0 0.5932 0.7261 8 6 ( 4697 1okr_A) ( 6025 1uhw_A) nil ( 4697 1okr_A) ( 6346 1xgs_A) 0.4531 0.5289 3.6250 ( 1 6 6) 0 0.6032 0.7551 8 6 ( 4697 1okr_A) ( 6450 2fok_A) 0.7297 0.5931 5.6963 ( 1 13 15) 0 0.7297 0.5931 8 10 ( 4697 1okr_A) ( 6451 2fok_A) 0.4201 0.3418 8.9399 ( 1 5 6) 0 0.4201 0.3418 8 11 ( 4697 1okr_A) ( 6476 2hts ) 0.4966 0.5648 13.0992 ( 0 4 6) 0 0.4966 0.5648 8 7 ( 4697 1okr_A) ( 6480 2irf_G) 0.6029 0.6736 5.5635 ( 1 10 10) 0 0.6029 0.6736 8 7 -------------------------------------------------------------------------------------------------------------------------