------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4894 1p4x_A) ( 288 1b4a_A) 0.4531 0.5289 3.9195 ( 1 6 6) 0 0.4978 0.6577 8 6 ( 4894 1p4x_A) ( 328 1b9m_A) 0.6249 0.5000 3.8590 ( 0 9 10) 0 0.6249 0.5234 8 10 ( 4894 1p4x_A) ( 410 1bja_A) 0.6192 0.6364 6.8268 ( 3 20 21) 0 0.6192 0.6383 8 7 ( 4894 1p4x_A) ( 424 1bm9_A) 0.5926 0.7245 6.7238 ( 1 9 10) 0 0.5926 0.7245 8 6 ( 4894 1p4x_A) ( 509 1c20_A) 0.4999 0.4999 5.8456 ( 0 6 6) 0 0.4999 0.4999 8 8 ( 4894 1p4x_A) ( 576 1cf7_A) 0.7500 0.9999 2.3027 ( 0 13 15) 0 0.7500 0.9999 8 6 ( 4894 1p4x_A) ( 904 1dp7_P) 0.7303 0.8204 4.1243 ( 1 13 15) 0 0.7303 0.8204 8 7 ( 4894 1p4x_A) ( 997 1e17_A) 0.4588 0.4850 4.4851 ( 2 10 10) 0 0.4588 0.5287 8 6 ( 4894 1p4x_A) ( 1461 1fc3_A) 0.6242 0.6242 6.8474 ( 0 9 10) 0 0.6242 0.6242 8 8 ( 4894 1p4x_A) ( 1576 1fnn_A) 0.7301 0.8199 5.0123 ( 1 13 15) 0 0.7301 0.8199 8 7 ( 4894 1p4x_A) ( 1595 1fp1_D) 0.6075 0.6075 5.9175 ( 2 14 15) 0 0.6075 0.6075 8 8 ( 4894 1p4x_A) ( 1597 1fp2_A) 0.7338 0.7338 6.5655 ( 1 14 15) 0 0.7338 0.7338 8 8 ( 4894 1p4x_A) ( 1664 1fzp_B) nil ( 4894 1p4x_A) ( 1973 1gvj_A) 0.7496 0.5454 4.6310 ( 0 12 15) 0 0.7496 0.5454 8 11 ( 4894 1p4x_A) ( 1999 1gxq_A) 0.6250 0.5555 2.6469 ( 0 10 10) 0 0.6250 0.5555 8 9 ( 4894 1p4x_A) ( 2162 1hbx_G) 0.7290 0.5410 6.6524 ( 1 13 15) 0 0.7290 0.5938 8 11 ( 4894 1p4x_A) ( 2224 1hkq_A) 0.6999 0.5819 4.4874 ( 1 10 15) 0 0.6999 0.6077 8 10 ( 4894 1p4x_A) ( 2278 1hsj_A) 0.8631 0.9773 2.9293 ( 1 18 21) 0 0.8631 0.9773 8 7 ( 4894 1p4x_A) ( 2410 1i5z_A) 0.7237 0.9060 3.4650 ( 1 12 15) 0 0.7237 0.9060 8 6 ( 4894 1p4x_A) ( 2482 1ig6_A) 0.4998 0.6657 6.6554 ( 0 6 6) 0 0.4998 0.6657 8 6 ( 4894 1p4x_A) ( 2544 1in4_A) 0.6241 0.7126 6.9870 ( 0 10 10) 0 0.6241 0.7126 8 7 ( 4894 1p4x_A) ( 2703 1j1v_A) 0.4201 0.4662 9.3369 ( 1 5 6) 0 0.4201 0.4662 8 6 ( 4894 1p4x_A) ( 2862 1jgs_A) 0.6200 0.6200 2.9180 ( 3 20 21) 0 0.6200 0.6200 8 8 ( 4894 1p4x_A) ( 2871 1jhg_A) 0.4997 0.6656 6.8332 ( 0 6 6) 0 0.4997 0.6656 8 6 ( 4894 1p4x_A) ( 3237 1ka8_A) 0.4239 0.4239 6.4532 ( 2 9 10) 0 0.4239 0.4239 8 8 ( 4894 1p4x_A) ( 3296 1kgs_A) 0.6250 0.5555 2.9710 ( 0 8 10) 0 0.6250 0.5555 8 9 ( 4894 1p4x_A) ( 3338 1kkx_A) 0.4998 0.6658 6.3863 ( 0 5 6) 0 0.4998 0.6658 8 6 ( 4894 1p4x_A) ( 3438 1ku9_A) 0.4589 0.4589 2.3794 ( 2 10 10) 0 0.4589 0.4589 8 8 ( 4894 1p4x_A) ( 3604 1ldj_A) 0.7483 0.9931 6.5517 ( 0 13 15) 0 0.7483 0.9931 8 6 ( 4894 1p4x_A) ( 3639 1lj9_A) 0.6078 0.6078 2.7846 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4894 1p4x_A) ( 3681 1lnw_A) 0.6078 0.6078 2.4553 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4894 1p4x_A) ( 3746 1lva_A) 0.6250 0.8333 2.3364 ( 0 9 10) 0 0.6250 0.8333 8 6 ( 4894 1p4x_A) ( 3748 1lva_A) 0.6249 0.8331 3.6818 ( 0 9 10) 0 0.6249 0.8331 8 6 ( 4894 1p4x_A) ( 3934 1mij_A) 0.4995 0.6646 8.0302 ( 0 4 6) 0 0.4995 0.6646 8 6 ( 4894 1p4x_A) ( 3960 1mkm_A) 0.4999 0.6661 5.7140 ( 0 5 6) 0 0.4999 0.6661 8 6 ( 4894 1p4x_A) ( 4082 1mzb_A) 0.4997 0.3999 7.0287 ( 0 6 6) 0 0.4997 0.3999 8 10 ( 4894 1p4x_A) ( 4537 1o7f_A) 0.7303 0.6555 4.2495 ( 1 13 15) 0 0.7303 0.6555 8 9 ( 4894 1p4x_A) ( 4697 1okr_A) 0.6078 0.6078 3.7887 ( 2 14 15) 0 0.6078 0.6078 8 8 ( 4894 1p4x_A) ( 4714 1omi_A) 0.8725 0.6992 5.9764 ( 0 17 21) 0 0.8725 0.6992 8 10 ( 4894 1p4x_A) ( 4745 1opc ) 0.6032 0.5431 2.5755 ( 1 10 10) 0 0.6032 0.5431 8 9 ( 4894 1p4x_A) ( 4840 1oyw_A) 0.4531 0.3823 5.9890 ( 1 6 6) 0 0.4531 0.3823 8 10 ( 4894 1p4x_A) ( 4872 1p2f_A) 0.6250 0.6250 2.8766 ( 0 9 10) 0 0.6250 0.6250 8 8 ( 4894 1p4x_A) ( 4894 1p4x_A) 1.0000 1.0000 0.0000 ( 0 25 28) 0 1.0000 1.0000 8 8 ( 4894 1p4x_A) ( 4895 1p4x_A) 0.8749 0.9998 2.7091 ( 0 19 21) 0 0.8749 0.9998 8 7 ( 4894 1p4x_A) ( 4986 1pdn_C) 0.4973 0.4973 12.3153 ( 0 6 6) 0 0.4973 0.4973 8 8 ( 4894 1p4x_A) ( 5074 1pp7_U) 0.7141 0.5874 3.6363 ( 1 11 15) 0 0.7141 0.5874 8 10 ( 4894 1p4x_A) ( 5110 1pue_E) 0.6249 0.7142 3.5198 ( 0 8 10) 0 0.6249 0.7142 8 7 ( 4894 1p4x_A) ( 5180 1q1h_A) 0.4996 0.5706 7.8420 ( 0 5 6) 0 0.4996 0.5706 8 7 ( 4894 1p4x_A) ( 5508 1qzz_A) 0.4998 0.6659 6.2305 ( 0 5 6) 0 0.4998 0.6659 8 6 ( 4894 1p4x_A) ( 5612 1rep_C) 0.5159 0.4604 6.4361 ( 2 11 15) 0 0.5159 0.4604 8 11 ( 4894 1p4x_A) ( 5613 1rep_C) 0.7496 0.7496 4.5866 ( 0 10 15) 0 0.7496 0.7496 8 8 ( 4894 1p4x_A) ( 5750 1s29_A) 0.6243 0.6243 6.5782 ( 0 9 10) 0 0.6243 0.6243 8 8 ( 4894 1p4x_A) ( 5764 1s3j_A) 0.9993 0.8885 3.6250 ( 0 25 28) 0 0.9993 0.8885 8 9 ( 4894 1p4x_A) ( 5776 1s7a_A) 0.4997 0.6655 6.9338 ( 0 5 6) 0 0.4997 0.6655 8 6 ( 4894 1p4x_A) ( 5829 1smt_A) 0.4506 0.4569 3.7701 ( 3 14 15) 0 0.4506 0.4569 8 7 ( 4894 1p4x_A) ( 5959 1ub9_A) 0.8749 0.8749 2.2624 ( 0 17 21) 0 0.8749 0.8749 8 8 ( 4894 1p4x_A) ( 5972 1ucr_A) 0.6250 0.8333 1.7719 ( 0 9 10) 0 0.6250 0.8333 8 6 ( 4894 1p4x_A) ( 6025 1uhw_A) 0.4200 0.4661 9.5250 ( 1 5 6) 0 0.4200 0.4661 8 6 ( 4894 1p4x_A) ( 6346 1xgs_A) 0.5000 0.6666 3.4070 ( 0 6 6) 0 0.6250 0.8331 8 6 ( 4894 1p4x_A) ( 6450 2fok_A) 0.5000 0.4000 4.1168 ( 0 6 6) 0 0.6244 0.4998 8 10 ( 4894 1p4x_A) ( 6451 2fok_A) 0.7494 0.5453 5.1009 ( 0 13 15) 0 0.7494 0.5453 8 11 ( 4894 1p4x_A) ( 6476 2hts ) 0.5527 0.5945 3.0480 ( 1 7 10) 0 0.5527 0.5945 8 7 ( 4894 1p4x_A) ( 6480 2irf_G) 0.6249 0.7141 4.2452 ( 0 8 10) 0 0.6249 0.7141 8 7 -------------------------------------------------------------------------------------------------------------------------