------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4986 1pdn_C) ( 288 1b4a_A) 0.4966 0.6529 13.0307 ( 0 5 6) 0 0.4966 0.6529 8 6 ( 4986 1pdn_C) ( 328 1b9m_A) 0.3651 0.3351 16.8159 ( 1 4 6) 0 0.3651 0.3351 8 10 ( 4986 1pdn_C) ( 410 1bja_A) 0.4975 0.5665 12.1287 ( 0 6 6) 0 0.4975 0.5665 8 7 ( 4986 1pdn_C) ( 424 1bm9_A) 0.4156 0.4587 17.8004 ( 1 5 6) 0 0.4156 0.4587 8 6 ( 4986 1pdn_C) ( 509 1c20_A) 0.4943 0.4943 14.9073 ( 0 5 6) 0 0.4943 0.4943 8 8 ( 4986 1pdn_C) ( 576 1cf7_A) nil ( 4986 1pdn_C) ( 904 1dp7_P) nil ( 4986 1pdn_C) ( 997 1e17_A) nil ( 4986 1pdn_C) ( 1461 1fc3_A) 0.4963 0.4963 13.3666 ( 0 6 6) 0 0.4963 0.4963 8 8 ( 4986 1pdn_C) ( 1576 1fnn_A) 0.4472 0.4829 17.0433 ( 1 6 6) 0 0.4472 0.4829 8 7 ( 4986 1pdn_C) ( 1595 1fp1_D) 0.4169 0.4169 16.3668 ( 1 5 6) 0 0.4169 0.4169 8 8 ( 4986 1pdn_C) ( 1597 1fp2_A) 0.1987 0.1987 8.1283 ( 3 6 6) 0 0.1987 0.1987 8 8 ( 4986 1pdn_C) ( 1664 1fzp_B) 0.2908 0.2968 11.9387 ( 2 6 6) 0 0.2908 0.2968 8 6 ( 4986 1pdn_C) ( 1973 1gvj_A) 0.4508 0.3516 13.4596 ( 1 6 6) 0 0.4508 0.3516 8 11 ( 4986 1pdn_C) ( 1999 1gxq_A) 0.4477 0.4126 16.6329 ( 1 6 6) 0 0.4477 0.4126 8 9 ( 4986 1pdn_C) ( 2162 1hbx_G) 0.3670 0.3192 7.9419 ( 1 4 6) 0 0.3670 0.3192 8 11 ( 4986 1pdn_C) ( 2224 1hkq_A) 0.4519 0.3818 11.5307 ( 1 6 6) 0 0.4519 0.3818 8 10 ( 4986 1pdn_C) ( 2278 1hsj_A) 0.4980 0.5675 11.4634 ( 0 6 6) 0 0.4980 0.5675 8 7 ( 4986 1pdn_C) ( 2410 1i5z_A) nil ( 4986 1pdn_C) ( 2482 1ig6_A) 0.4983 0.6597 10.9303 ( 0 6 6) 0 0.4983 0.6597 8 6 ( 4986 1pdn_C) ( 2544 1in4_A) nil ( 4986 1pdn_C) ( 2703 1j1v_A) 0.4928 0.6383 15.8456 ( 0 6 6) 0 0.4928 0.6383 8 6 ( 4986 1pdn_C) ( 2862 1jgs_A) 0.4966 0.4966 13.0462 ( 0 6 6) 0 0.4966 0.4966 8 8 ( 4986 1pdn_C) ( 2871 1jhg_A) 0.4981 0.6589 11.2248 ( 0 6 6) 0 0.4981 0.6589 8 6 ( 4986 1pdn_C) ( 3237 1ka8_A) nil ( 4986 1pdn_C) ( 3296 1kgs_A) 0.4991 0.4439 9.4452 ( 0 5 6) 0 0.4996 0.4442 8 9 ( 4986 1pdn_C) ( 3338 1kkx_A) nil ( 4986 1pdn_C) ( 3438 1ku9_A) 0.4986 0.4986 10.5110 ( 0 6 6) 0 0.4986 0.4986 8 8 ( 4986 1pdn_C) ( 3604 1ldj_A) nil ( 4986 1pdn_C) ( 3639 1lj9_A) 0.4183 0.4183 14.4955 ( 1 5 6) 0 0.4183 0.4183 8 8 ( 4986 1pdn_C) ( 3681 1lnw_A) 0.4192 0.4192 12.6973 ( 1 5 6) 0 0.4192 0.4192 8 8 ( 4986 1pdn_C) ( 3746 1lva_A) nil ( 4986 1pdn_C) ( 3748 1lva_A) nil ( 4986 1pdn_C) ( 3934 1mij_A) 0.4926 0.6377 15.9379 ( 0 4 6) 0 0.4926 0.6377 8 6 ( 4986 1pdn_C) ( 3960 1mkm_A) nil ( 4986 1pdn_C) ( 4082 1mzb_A) 0.4976 0.3992 11.9177 ( 0 6 6) 0 0.4976 0.3992 8 10 ( 4986 1pdn_C) ( 4537 1o7f_A) 0.4998 0.4443 6.3661 ( 0 6 6) 0 0.4998 0.4443 8 9 ( 4986 1pdn_C) ( 4697 1okr_A) 0.4876 0.4876 18.2589 ( 0 6 6) 0 0.4876 0.4876 8 8 ( 4986 1pdn_C) ( 4714 1omi_A) 0.2910 0.2801 7.7353 ( 2 6 6) 0 0.2910 0.2801 8 10 ( 4986 1pdn_C) ( 4745 1opc ) 0.2462 0.2441 7.2732 ( 2 5 6) 1 0.2462 0.2441 8 9 ( 4986 1pdn_C) ( 4840 1oyw_A) 0.1985 0.1967 21.6841 ( 2 4 6) 0 0.1985 0.1967 8 10 ( 4986 1pdn_C) ( 4872 1p2f_A) 0.1987 0.1987 9.8629 ( 3 6 6) 0 0.1987 0.1987 8 8 ( 4986 1pdn_C) ( 4894 1p4x_A) 0.4973 0.4973 12.3153 ( 0 6 6) 0 0.4973 0.4973 8 8 ( 4986 1pdn_C) ( 4895 1p4x_A) 0.4976 0.5668 11.9711 ( 0 6 6) 0 0.4976 0.5668 8 7 ( 4986 1pdn_C) ( 4986 1pdn_C) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 4986 1pdn_C) ( 5074 1pp7_U) 0.4497 0.3809 14.8223 ( 1 6 6) 0 0.4497 0.3809 8 10 ( 4986 1pdn_C) ( 5110 1pue_E) 0.2462 0.2478 6.5839 ( 2 5 6) 0 0.2462 0.2478 8 7 ( 4986 1pdn_C) ( 5180 1q1h_A) 0.4973 0.5662 12.3275 ( 0 5 6) 0 0.4973 0.5662 8 7 ( 4986 1pdn_C) ( 5508 1qzz_A) 0.4971 0.6548 12.5353 ( 0 4 6) 0 0.4971 0.6548 8 6 ( 4986 1pdn_C) ( 5612 1rep_C) 0.4981 0.3633 11.2337 ( 0 5 6) 0 0.4981 0.3633 8 11 ( 4986 1pdn_C) ( 5613 1rep_C) 0.4526 0.4526 9.4954 ( 1 6 6) 0 0.4526 0.4526 8 8 ( 4986 1pdn_C) ( 5750 1s29_A) nil ( 4986 1pdn_C) ( 5764 1s3j_A) 0.4981 0.4434 11.3180 ( 0 6 6) 0 0.4981 0.4434 8 9 ( 4986 1pdn_C) ( 5776 1s7a_A) nil ( 4986 1pdn_C) ( 5829 1smt_A) 0.4201 0.4451 9.0081 ( 1 5 6) 0 0.4201 0.4451 8 7 ( 4986 1pdn_C) ( 5959 1ub9_A) 0.4994 0.4994 8.3583 ( 0 6 6) 0 0.4994 0.4994 8 8 ( 4986 1pdn_C) ( 5972 1ucr_A) nil ( 4986 1pdn_C) ( 6025 1uhw_A) 0.4186 0.4637 13.8864 ( 1 5 6) 0 0.4186 0.4637 8 6 ( 4986 1pdn_C) ( 6346 1xgs_A) 0.1987 0.1996 10.4648 ( 3 6 6) 0 0.1987 0.1996 8 6 ( 4986 1pdn_C) ( 6450 2fok_A) nil ( 4986 1pdn_C) ( 6451 2fok_A) 0.2908 0.2726 12.1374 ( 2 6 6) 0 0.2908 0.2726 8 11 ( 4986 1pdn_C) ( 6476 2hts ) nil ( 4986 1pdn_C) ( 6480 2irf_G) 0.4202 0.4451 8.7677 ( 1 5 6) 0 0.4202 0.4451 8 7 -------------------------------------------------------------------------------------------------------------------------