------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5612 1rep_C) ( 288 1b4a_A) 0.3522 0.5282 8.1307 ( 1 6 6) 0 0.3522 0.5282 11 6 ( 5612 1rep_C) ( 328 1b9m_A) 0.4542 0.4994 8.3074 ( 0 8 10) 0 0.4542 0.4994 11 10 ( 5612 1rep_C) ( 410 1bja_A) 0.4434 0.6313 5.1904 ( 1 8 10) 0 0.4434 0.6313 11 7 ( 5612 1rep_C) ( 424 1bm9_A) 0.3753 0.3973 8.1459 ( 3 12 15) 0 0.3753 0.6536 11 6 ( 5612 1rep_C) ( 509 1c20_A) 0.4433 0.5772 5.7958 ( 1 8 10) 0 0.4433 0.5772 11 8 ( 5612 1rep_C) ( 576 1cf7_A) 0.4473 0.7241 7.1665 ( 1 9 10) 0 0.4542 0.8271 11 6 ( 5612 1rep_C) ( 904 1dp7_P) 0.4470 0.6541 8.9601 ( 1 9 10) 0 0.4470 0.6541 11 7 ( 5612 1rep_C) ( 997 1e17_A) 0.3803 0.4409 3.9389 ( 2 9 10) 0 0.3803 0.5289 11 6 ( 5612 1rep_C) ( 1461 1fc3_A) 0.3636 0.4999 4.6508 ( 0 5 6) 0 0.3636 0.4999 11 8 ( 5612 1rep_C) ( 1576 1fnn_A) 0.3636 0.5712 5.3852 ( 0 5 6) 0 0.3636 0.5712 11 7 ( 5612 1rep_C) ( 1595 1fp1_D) 0.3985 0.4220 4.1689 ( 3 13 15) 0 0.4468 0.5907 11 8 ( 5612 1rep_C) ( 1597 1fp2_A) 0.4471 0.5916 8.6591 ( 1 9 10) 0 0.4471 0.5916 11 8 ( 5612 1rep_C) ( 1664 1fzp_B) nil ( 5612 1rep_C) ( 1973 1gvj_A) 0.5849 0.5849 3.9851 ( 2 16 21) 0 0.5849 0.5849 11 11 ( 5612 1rep_C) ( 1999 1gxq_A) 0.4545 0.5554 4.8024 ( 0 7 10) 0 0.4545 0.5554 11 9 ( 5612 1rep_C) ( 2162 1hbx_G) 0.6323 0.6323 4.5860 ( 1 16 21) 0 0.6323 0.6323 11 11 ( 5612 1rep_C) ( 2224 1hkq_A) 0.8391 0.8958 5.4224 ( 3 35 45) 0 0.8391 0.8958 11 10 ( 5612 1rep_C) ( 2278 1hsj_A) 0.5374 0.7920 4.3173 ( 1 11 15) 0 0.5374 0.7920 11 7 ( 5612 1rep_C) ( 2410 1i5z_A) 0.4473 0.7246 6.6230 ( 1 9 10) 0 0.4542 0.8265 11 6 ( 5612 1rep_C) ( 2482 1ig6_A) 0.3636 0.6660 6.0582 ( 0 5 6) 0 0.3636 0.6660 11 6 ( 5612 1rep_C) ( 2544 1in4_A) 0.3636 0.5706 7.6974 ( 0 4 6) 0 0.3636 0.5706 11 7 ( 5612 1rep_C) ( 2703 1j1v_A) 0.3636 0.6657 6.5596 ( 0 5 6) 0 0.3636 0.6657 11 6 ( 5612 1rep_C) ( 2862 1jgs_A) 0.3985 0.4220 5.4419 ( 3 13 15) 0 0.3985 0.4997 11 8 ( 5612 1rep_C) ( 2871 1jhg_A) 0.3636 0.6662 5.5253 ( 0 5 6) 0 0.3636 0.6662 11 6 ( 5612 1rep_C) ( 3237 1ka8_A) 0.5409 0.7289 6.8177 ( 1 13 15) 0 0.5409 0.7289 11 8 ( 5612 1rep_C) ( 3296 1kgs_A) 0.4363 0.5109 5.8852 ( 1 7 10) 0 0.4363 0.5109 11 9 ( 5612 1rep_C) ( 3338 1kkx_A) 0.3636 0.6658 6.3624 ( 0 4 6) 0 0.3636 0.6658 11 6 ( 5612 1rep_C) ( 3438 1ku9_A) 0.3522 0.4528 8.4989 ( 1 6 6) 0 0.3522 0.4528 11 8 ( 5612 1rep_C) ( 3604 1ldj_A) 0.3752 0.3973 8.4265 ( 3 12 15) 0 0.3752 0.6475 11 6 ( 5612 1rep_C) ( 3639 1lj9_A) 0.3985 0.4220 5.0505 ( 3 13 15) 0 0.3985 0.4220 11 8 ( 5612 1rep_C) ( 3681 1lnw_A) 0.3985 0.4220 4.8625 ( 3 13 15) 0 0.3985 0.4220 11 8 ( 5612 1rep_C) ( 3746 1lva_A) 0.4541 0.8243 8.8112 ( 0 9 10) 1 0.4541 0.8243 11 6 ( 5612 1rep_C) ( 3748 1lva_A) 0.3636 0.6666 2.8249 ( 0 5 6) 0 0.3636 0.6666 11 6 ( 5612 1rep_C) ( 3934 1mij_A) 0.3634 0.6622 9.7252 ( 0 3 6) 0 0.3634 0.6622 11 6 ( 5612 1rep_C) ( 3960 1mkm_A) 0.3522 0.5284 7.4525 ( 1 6 6) 0 0.3522 0.5284 11 6 ( 5612 1rep_C) ( 4082 1mzb_A) 0.4434 0.4825 5.0322 ( 1 8 10) 0 0.4434 0.4825 11 10 ( 5612 1rep_C) ( 4537 1o7f_A) 0.4788 0.5288 4.7336 ( 2 12 15) 0 0.5942 0.6807 11 9 ( 5612 1rep_C) ( 4697 1okr_A) 0.5412 0.7300 5.1073 ( 1 13 15) 0 0.5413 0.7303 11 8 ( 5612 1rep_C) ( 4714 1omi_A) 0.3635 0.3997 9.0192 ( 0 5 6) 0 0.4434 0.4826 11 10 ( 5612 1rep_C) ( 4745 1opc ) 0.4474 0.5370 3.8495 ( 1 9 10) 0 0.4474 0.5370 11 9 ( 5612 1rep_C) ( 4840 1oyw_A) 0.3803 0.3967 3.1437 ( 2 9 10) 0 0.3803 0.4000 11 10 ( 5612 1rep_C) ( 4872 1p2f_A) 0.3803 0.4240 2.8847 ( 2 9 10) 0 0.3803 0.5000 11 8 ( 5612 1rep_C) ( 4894 1p4x_A) 0.4604 0.5159 6.4361 ( 2 11 15) 0 0.4604 0.5159 11 8 ( 5612 1rep_C) ( 4895 1p4x_A) 0.1957 0.1992 9.1299 ( 2 4 6) 0 0.1957 0.1992 11 7 ( 5612 1rep_C) ( 4986 1pdn_C) 0.3633 0.4981 11.2337 ( 0 5 6) 0 0.3633 0.4981 11 8 ( 5612 1rep_C) ( 5074 1pp7_U) 0.3857 0.3900 5.4875 ( 4 16 21) 0 0.3857 0.4000 11 10 ( 5612 1rep_C) ( 5110 1pue_E) 0.4544 0.7132 6.1965 ( 0 9 10) 0 0.4544 0.7132 11 7 ( 5612 1rep_C) ( 5180 1q1h_A) 0.4789 0.5685 4.3845 ( 2 12 15) 0 0.4789 0.5693 11 7 ( 5612 1rep_C) ( 5508 1qzz_A) 0.3636 0.6664 4.7307 ( 0 5 6) 0 0.3636 0.6664 11 6 ( 5612 1rep_C) ( 5612 1rep_C) 1.0000 1.0000 0.0000 ( 0 46 55) 0 1.0000 1.0000 11 11 ( 5612 1rep_C) ( 5613 1rep_C) 0.5331 0.6968 8.5764 ( 1 10 15) 0 0.5331 0.6968 11 8 ( 5612 1rep_C) ( 5750 1s29_A) 0.3417 0.4199 10.1622 ( 1 5 6) 0 0.4534 0.6193 11 8 ( 5612 1rep_C) ( 5764 1s3j_A) 0.4061 0.4160 4.6630 ( 4 17 21) 0 0.4254 0.4438 11 9 ( 5612 1rep_C) ( 5776 1s7a_A) 0.2377 0.2488 7.8348 ( 2 5 6) 0 0.2377 0.2488 11 6 ( 5612 1rep_C) ( 5829 1smt_A) 0.4932 0.6052 3.3647 ( 2 13 15) 0 0.4932 0.7124 11 7 ( 5612 1rep_C) ( 5959 1ub9_A) 0.3857 0.3957 4.9440 ( 4 16 21) 0 0.3857 0.3957 11 8 ( 5612 1rep_C) ( 5972 1ucr_A) 0.4540 0.8229 9.1461 ( 0 9 10) 1 0.4540 0.8229 11 6 ( 5612 1rep_C) ( 6025 1uhw_A) 0.3418 0.4663 8.6243 ( 1 5 6) 0 0.3418 0.4663 11 6 ( 5612 1rep_C) ( 6346 1xgs_A) 0.3636 0.6655 7.0178 ( 0 5 6) 1 0.3636 0.6655 11 6 ( 5612 1rep_C) ( 6450 2fok_A) 0.3418 0.3670 8.2659 ( 1 5 6) 0 0.3636 0.4000 11 10 ( 5612 1rep_C) ( 6451 2fok_A) 0.5412 0.5412 4.5384 ( 1 13 15) 0 0.5412 0.5412 11 11 ( 5612 1rep_C) ( 6476 2hts ) 0.3419 0.4455 3.6327 ( 1 5 6) 0 0.3636 0.5707 11 7 ( 5612 1rep_C) ( 6480 2irf_G) 0.4788 0.5684 5.0694 ( 2 12 15) 0 0.4788 0.5940 11 7 -------------------------------------------------------------------------------------------------------------------------