------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5750 1s29_A) ( 288 1b4a_A) 0.1987 0.1996 5.6891 ( 3 6 6) 0 0.1987 0.1996 8 6 ( 5750 1s29_A) ( 328 1b9m_A) 0.4238 0.3966 7.5353 ( 2 9 10) 0 0.4238 0.3966 8 10 ( 5750 1s29_A) ( 410 1bja_A) 0.2328 0.2330 5.1889 ( 6 14 15) 0 0.4526 0.4909 8 7 ( 5750 1s29_A) ( 424 1bm9_A) 0.4997 0.6655 6.9756 ( 0 5 6) 0 0.4997 0.6655 8 6 ( 5750 1s29_A) ( 509 1c20_A) 0.4997 0.4997 6.8184 ( 0 3 6) 0 0.4997 0.4997 8 8 ( 5750 1s29_A) ( 576 1cf7_A) 0.6246 0.8318 5.6138 ( 0 9 10) 0 0.6246 0.8318 8 6 ( 5750 1s29_A) ( 904 1dp7_P) 0.4531 0.4917 5.9475 ( 1 6 6) 0 0.4531 0.4917 8 7 ( 5750 1s29_A) ( 997 1e17_A) 0.4506 0.4612 5.3252 ( 3 14 15) 0 0.4506 0.4612 8 6 ( 5750 1s29_A) ( 1461 1fc3_A) 0.4204 0.4204 6.2179 ( 1 5 6) 0 0.4204 0.4204 8 8 ( 5750 1s29_A) ( 1576 1fnn_A) 0.6247 0.7138 5.2223 ( 0 9 10) 0 0.6247 0.7138 8 7 ( 5750 1s29_A) ( 1595 1fp1_D) 0.6030 0.6030 5.2430 ( 1 10 10) 0 0.6030 0.6030 8 8 ( 5750 1s29_A) ( 1597 1fp2_A) 0.6076 0.6076 5.4396 ( 2 14 15) 0 0.6076 0.6076 8 8 ( 5750 1s29_A) ( 1664 1fzp_B) nil ( 5750 1s29_A) ( 1973 1gvj_A) 0.4204 0.3419 3.6914 ( 1 5 6) 0 0.7243 0.5941 8 11 ( 5750 1s29_A) ( 1999 1gxq_A) 0.6250 0.5555 3.0037 ( 0 10 10) 0 0.6250 0.5555 8 9 ( 5750 1s29_A) ( 2162 1hbx_G) 0.7234 0.5397 4.9463 ( 1 12 15) 0 0.7234 0.5397 8 11 ( 5750 1s29_A) ( 2224 1hkq_A) 0.1661 0.1654 14.3267 ( 3 5 6) 0 0.3671 0.3363 8 10 ( 5750 1s29_A) ( 2278 1hsj_A) 0.5000 0.5714 2.4288 ( 0 6 6) 0 0.5000 0.5714 8 7 ( 5750 1s29_A) ( 2410 1i5z_A) 0.5931 0.7259 4.1035 ( 1 9 10) 0 0.5931 0.7259 8 6 ( 5750 1s29_A) ( 2482 1ig6_A) 0.2462 0.2488 6.8464 ( 2 5 6) 0 0.3847 0.3948 8 6 ( 5750 1s29_A) ( 2544 1in4_A) 0.5930 0.6567 5.0367 ( 1 9 10) 0 0.5930 0.6567 8 7 ( 5750 1s29_A) ( 2703 1j1v_A) 0.4527 0.5279 8.9403 ( 1 6 6) 0 0.4527 0.5279 8 6 ( 5750 1s29_A) ( 2862 1jgs_A) 0.4589 0.4589 4.1840 ( 2 10 10) 0 0.4589 0.4589 8 8 ( 5750 1s29_A) ( 2871 1jhg_A) 0.4963 0.6518 13.2920 ( 0 5 6) 0 0.4963 0.6518 8 6 ( 5750 1s29_A) ( 3237 1ka8_A) 0.5927 0.5927 6.2692 ( 1 9 10) 0 0.5927 0.5927 8 8 ( 5750 1s29_A) ( 3296 1kgs_A) 0.6249 0.5555 3.6435 ( 0 8 10) 0 0.6249 0.5555 8 9 ( 5750 1s29_A) ( 3338 1kkx_A) 0.3671 0.3879 6.6800 ( 1 4 6) 0 0.3671 0.3879 8 6 ( 5750 1s29_A) ( 3438 1ku9_A) 0.4586 0.4586 7.9780 ( 2 10 10) 0 0.4993 0.4993 8 8 ( 5750 1s29_A) ( 3604 1ldj_A) 0.6241 0.8297 7.0192 ( 0 10 10) 0 0.6241 0.8297 8 6 ( 5750 1s29_A) ( 3639 1lj9_A) 0.4589 0.4589 3.3950 ( 2 10 10) 0 0.4589 0.4589 8 8 ( 5750 1s29_A) ( 3681 1lnw_A) 0.4589 0.4589 3.8900 ( 2 10 10) 0 0.4589 0.4589 8 8 ( 5750 1s29_A) ( 3746 1lva_A) 0.6247 0.8319 5.4957 ( 0 8 10) 0 0.6247 0.8319 8 6 ( 5750 1s29_A) ( 3748 1lva_A) 0.6249 0.8330 3.7001 ( 0 9 10) 0 0.6249 0.8330 8 6 ( 5750 1s29_A) ( 3934 1mij_A) nil ( 5750 1s29_A) ( 3960 1mkm_A) 0.4586 0.4846 7.9369 ( 2 10 10) 0 0.4586 0.4846 8 6 ( 5750 1s29_A) ( 4082 1mzb_A) 0.4999 0.4000 5.0245 ( 0 5 6) 0 0.4999 0.4000 8 10 ( 5750 1s29_A) ( 4537 1o7f_A) 0.6249 0.5555 4.2815 ( 0 10 10) 0 0.6249 0.5555 8 9 ( 5750 1s29_A) ( 4697 1okr_A) 0.5928 0.5928 6.1117 ( 1 9 10) 0 0.5928 0.5928 8 8 ( 5750 1s29_A) ( 4714 1omi_A) 0.6232 0.4994 8.4465 ( 0 9 10) 0 0.7485 0.5995 8 10 ( 5750 1s29_A) ( 4745 1opc ) 0.6032 0.5430 3.2060 ( 1 10 10) 0 0.6032 0.5430 8 9 ( 5750 1s29_A) ( 4840 1oyw_A) 0.4999 0.4000 4.5388 ( 0 6 6) 0 0.4999 0.4204 8 10 ( 5750 1s29_A) ( 4872 1p2f_A) 0.4996 0.4996 7.4378 ( 0 5 6) 0 0.4996 0.4996 8 8 ( 5750 1s29_A) ( 4894 1p4x_A) 0.6243 0.6243 6.5782 ( 0 9 10) 0 0.6243 0.6243 8 8 ( 5750 1s29_A) ( 4895 1p4x_A) 0.6245 0.7134 6.0180 ( 0 8 10) 0 0.6245 0.7134 8 7 ( 5750 1s29_A) ( 4986 1pdn_C) nil ( 5750 1s29_A) ( 5074 1pp7_U) 0.5772 0.4825 5.3752 ( 1 8 10) 0 0.5772 0.4825 8 10 ( 5750 1s29_A) ( 5110 1pue_E) 0.6248 0.7138 4.9918 ( 0 10 10) 0 0.6248 0.7138 8 7 ( 5750 1s29_A) ( 5180 1q1h_A) 0.4237 0.4335 8.4529 ( 2 9 10) 0 0.4237 0.4335 8 7 ( 5750 1s29_A) ( 5508 1qzz_A) 0.4988 0.6615 10.1065 ( 0 6 6) 0 0.4988 0.6615 8 6 ( 5750 1s29_A) ( 5612 1rep_C) 0.4199 0.3417 10.1622 ( 1 5 6) 0 0.6193 0.4534 8 11 ( 5750 1s29_A) ( 5613 1rep_C) 0.4999 0.4999 5.4744 ( 0 3 6) 0 0.4999 0.4999 8 8 ( 5750 1s29_A) ( 5750 1s29_A) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 5750 1s29_A) ( 5764 1s3j_A) 0.6249 0.5555 3.9761 ( 0 10 10) 0 0.6249 0.5555 8 9 ( 5750 1s29_A) ( 5776 1s7a_A) 0.7306 0.9277 1.6028 ( 1 13 15) 0 0.7306 0.9277 8 6 ( 5750 1s29_A) ( 5829 1smt_A) 0.6237 0.7117 7.7736 ( 0 9 10) 0 0.6237 0.7117 8 7 ( 5750 1s29_A) ( 5959 1ub9_A) 0.6246 0.6246 5.7432 ( 0 8 10) 0 0.6246 0.6246 8 8 ( 5750 1s29_A) ( 5972 1ucr_A) 0.6249 0.8331 3.6452 ( 0 9 10) 0 0.6249 0.8331 8 6 ( 5750 1s29_A) ( 6025 1uhw_A) nil ( 5750 1s29_A) ( 6346 1xgs_A) 0.4990 0.6624 9.6278 ( 0 6 6) 0 0.6238 0.8285 8 6 ( 5750 1s29_A) ( 6450 2fok_A) 0.7245 0.6366 4.8565 ( 2 17 21) 0 0.7245 0.6366 8 10 ( 5750 1s29_A) ( 6451 2fok_A) 0.4997 0.3636 7.0655 ( 0 3 6) 0 0.4997 0.3802 8 11 ( 5750 1s29_A) ( 6476 2hts ) 0.5930 0.6567 5.2056 ( 1 9 10) 0 0.5930 0.6567 8 7 ( 5750 1s29_A) ( 6480 2irf_G) 0.4999 0.5713 4.5369 ( 0 6 6) 0 0.4999 0.5713 8 7 -------------------------------------------------------------------------------------------------------------------------