------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5764 1s3j_A) ( 288 1b4a_A) 0.4161 0.5289 2.6968 ( 1 6 6) 0 0.4161 0.5289 9 6 ( 5764 1s3j_A) ( 328 1b9m_A) 0.5534 0.5235 2.4844 ( 2 13 15) 0 0.5534 0.5235 9 10 ( 5764 1s3j_A) ( 410 1bja_A) 0.5978 0.6364 6.9331 ( 3 20 21) 0 0.5978 0.6385 9 7 ( 5764 1s3j_A) ( 424 1bm9_A) 0.5532 0.6236 5.0038 ( 2 13 15) 0 0.5532 0.6236 9 6 ( 5764 1s3j_A) ( 509 1c20_A) 0.5550 0.6241 7.1100 ( 0 9 10) 0 0.5550 0.6241 9 8 ( 5764 1s3j_A) ( 576 1cf7_A) 0.6667 0.9999 1.6448 ( 0 13 15) 0 0.6667 0.9999 9 6 ( 5764 1s3j_A) ( 904 1dp7_P) 0.6582 0.8289 4.3578 ( 1 14 15) 0 0.6582 0.8289 9 7 ( 5764 1s3j_A) ( 997 1e17_A) 0.4407 0.4850 3.5556 ( 2 10 10) 0 0.4433 0.6580 9 6 ( 5764 1s3j_A) ( 1461 1fc3_A) 0.5550 0.6239 7.3518 ( 0 9 10) 0 0.5550 0.6239 9 8 ( 5764 1s3j_A) ( 1576 1fnn_A) 0.6554 0.8201 4.8053 ( 1 13 15) 0 0.6554 0.8201 9 7 ( 5764 1s3j_A) ( 1595 1fp1_D) 0.5736 0.6077 4.7432 ( 2 14 15) 0 0.5736 0.6077 9 8 ( 5764 1s3j_A) ( 1597 1fp2_A) 0.6581 0.7348 4.9449 ( 1 14 15) 0 0.6581 0.7348 9 8 ( 5764 1s3j_A) ( 1664 1fzp_B) nil ( 5764 1s3j_A) ( 1973 1gvj_A) 0.7704 0.6336 5.1669 ( 1 18 21) 0 0.7704 0.6336 9 11 ( 5764 1s3j_A) ( 1999 1gxq_A) 0.5556 0.5556 2.1622 ( 0 10 10) 0 0.5556 0.5556 9 9 ( 5764 1s3j_A) ( 2162 1hbx_G) 0.6956 0.6016 5.5158 ( 2 18 21) 0 0.6956 0.6016 9 11 ( 5764 1s3j_A) ( 2224 1hkq_A) 0.5073 0.4960 3.9463 ( 3 16 21) 0 0.5073 0.4960 9 10 ( 5764 1s3j_A) ( 2278 1hsj_A) 0.7709 0.9769 3.7054 ( 1 18 21) 0 0.7709 0.9769 9 7 ( 5764 1s3j_A) ( 2410 1i5z_A) 0.6556 0.9276 2.3515 ( 1 13 15) 0 0.6556 0.9276 9 6 ( 5764 1s3j_A) ( 2482 1ig6_A) 0.4442 0.6645 8.1446 ( 0 6 6) 0 0.4442 0.6645 9 6 ( 5764 1s3j_A) ( 2544 1in4_A) 0.5736 0.6383 4.8253 ( 2 14 15) 0 0.5736 0.6383 9 7 ( 5764 1s3j_A) ( 2703 1j1v_A) 0.4440 0.6631 9.2389 ( 0 6 6) 0 0.4444 0.6665 9 6 ( 5764 1s3j_A) ( 2862 1jgs_A) 0.7221 0.7551 3.2793 ( 3 25 28) 0 0.7221 0.7551 9 8 ( 5764 1s3j_A) ( 2871 1jhg_A) 0.4430 0.6557 12.2825 ( 0 6 6) 0 0.4430 0.6557 9 6 ( 5764 1s3j_A) ( 3237 1ka8_A) 0.5369 0.5930 5.2207 ( 1 9 10) 0 0.5369 0.5930 9 8 ( 5764 1s3j_A) ( 3296 1kgs_A) 0.5555 0.5555 2.3780 ( 0 8 10) 0 0.5555 0.5555 9 9 ( 5764 1s3j_A) ( 3338 1kkx_A) 0.4419 0.6483 14.0704 ( 0 4 6) 0 0.4419 0.6483 9 6 ( 5764 1s3j_A) ( 3438 1ku9_A) 0.4408 0.4589 1.5684 ( 2 10 10) 0 0.4408 0.4589 9 8 ( 5764 1s3j_A) ( 3604 1ldj_A) 0.6651 0.9885 7.4654 ( 0 13 15) 0 0.6651 0.9885 9 6 ( 5764 1s3j_A) ( 3639 1lj9_A) 0.7217 0.7546 5.1956 ( 3 25 28) 0 0.7217 0.7546 9 8 ( 5764 1s3j_A) ( 3681 1lnw_A) 0.7723 0.8653 2.9233 ( 1 19 21) 0 0.7723 0.8653 9 8 ( 5764 1s3j_A) ( 3746 1lva_A) 0.5556 0.8333 1.4179 ( 0 9 10) 0 0.5556 0.8333 9 6 ( 5764 1s3j_A) ( 3748 1lva_A) 0.5555 0.8333 2.5468 ( 0 9 10) 0 0.5555 0.8333 9 6 ( 5764 1s3j_A) ( 3934 1mij_A) 0.4829 0.5627 10.4668 ( 1 6 10) 0 0.4829 0.6627 9 6 ( 5764 1s3j_A) ( 3960 1mkm_A) 0.5288 0.5818 5.3506 ( 2 12 15) 0 0.5288 0.6595 9 6 ( 5764 1s3j_A) ( 4082 1mzb_A) 0.5726 0.5378 8.4224 ( 2 14 15) 0 0.5726 0.5378 9 10 ( 5764 1s3j_A) ( 4537 1o7f_A) 0.5904 0.5904 4.1512 ( 2 15 15) 0 0.5904 0.5904 9 9 ( 5764 1s3j_A) ( 4697 1okr_A) 0.5737 0.6078 2.9584 ( 2 14 15) 0 0.5737 0.6078 9 8 ( 5764 1s3j_A) ( 4714 1omi_A) 0.7767 0.6994 5.5782 ( 0 18 21) 0 0.7767 0.6994 9 10 ( 5764 1s3j_A) ( 4745 1opc ) 0.5431 0.5431 2.3327 ( 1 10 10) 0 0.5431 0.5431 9 9 ( 5764 1s3j_A) ( 4840 1oyw_A) 0.5737 0.5386 4.4429 ( 2 14 15) 0 0.5737 0.5386 9 10 ( 5764 1s3j_A) ( 4872 1p2f_A) 0.5556 0.6250 1.5566 ( 0 9 10) 0 0.5556 0.6250 9 8 ( 5764 1s3j_A) ( 4894 1p4x_A) 0.8885 0.9993 3.6250 ( 0 25 28) 0 0.8885 0.9993 9 8 ( 5764 1s3j_A) ( 4895 1p4x_A) 0.7777 0.9996 3.1239 ( 0 19 21) 0 0.7777 0.9996 9 7 ( 5764 1s3j_A) ( 4986 1pdn_C) 0.4434 0.4981 11.3180 ( 0 6 6) 0 0.4434 0.4981 9 8 ( 5764 1s3j_A) ( 5074 1pp7_U) 0.6516 0.5910 2.8328 ( 1 12 15) 0 0.6516 0.5910 9 10 ( 5764 1s3j_A) ( 5110 1pue_E) 0.6583 0.8291 3.8318 ( 1 14 15) 0 0.6583 0.8291 9 7 ( 5764 1s3j_A) ( 5180 1q1h_A) 0.4439 0.5694 9.7116 ( 0 5 6) 0 0.4439 0.5694 9 7 ( 5764 1s3j_A) ( 5508 1qzz_A) 0.4444 0.6663 5.3073 ( 0 5 6) 0 0.4444 0.6663 9 6 ( 5764 1s3j_A) ( 5612 1rep_C) 0.4438 0.3634 10.1182 ( 0 5 6) 0 0.4438 0.4061 9 11 ( 5764 1s3j_A) ( 5613 1rep_C) 0.6664 0.7496 4.7012 ( 0 10 15) 0 0.6664 0.7496 9 8 ( 5764 1s3j_A) ( 5750 1s29_A) 0.5554 0.6248 5.0932 ( 0 9 10) 0 0.5554 0.6248 9 8 ( 5764 1s3j_A) ( 5764 1s3j_A) 1.0000 1.0000 0.0000 ( 0 34 36) 0 1.0000 1.0000 9 9 ( 5764 1s3j_A) ( 5776 1s7a_A) 0.4444 0.6663 5.2846 ( 0 5 6) 0 0.4444 0.6663 9 6 ( 5764 1s3j_A) ( 5829 1smt_A) 0.4422 0.4569 1.9616 ( 3 14 15) 0 0.4422 0.4569 9 7 ( 5764 1s3j_A) ( 5959 1ub9_A) 0.7778 0.8750 1.3557 ( 0 18 21) 0 0.7778 0.8750 9 8 ( 5764 1s3j_A) ( 5972 1ucr_A) 0.5556 0.8333 1.6918 ( 0 9 10) 0 0.5556 0.8333 9 6 ( 5764 1s3j_A) ( 6025 1uhw_A) nil ( 5764 1s3j_A) ( 6346 1xgs_A) 0.4444 0.6666 3.7956 ( 0 6 6) 0 0.5555 0.8331 9 6 ( 5764 1s3j_A) ( 6450 2fok_A) 0.6663 0.5998 5.1515 ( 0 13 15) 0 0.6663 0.5998 9 10 ( 5764 1s3j_A) ( 6451 2fok_A) 0.4439 0.3634 9.4665 ( 0 4 6) 0 0.4439 0.3634 9 11 ( 5764 1s3j_A) ( 6476 2hts ) 0.5110 0.5945 3.0908 ( 1 7 10) 0 0.5110 0.5945 9 7 ( 5764 1s3j_A) ( 6480 2irf_G) 0.6581 0.8284 5.0606 ( 1 14 15) 0 0.6581 0.8284 9 7 -------------------------------------------------------------------------------------------------------------------------