------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6450 2fok_A) ( 288 1b4a_A) 0.3671 0.3949 3.8125 ( 2 8 10) 0 0.3671 0.3949 10 6 ( 6450 2fok_A) ( 328 1b9m_A) 0.5906 0.5906 5.9706 ( 1 12 15) 0 0.5906 0.5906 10 10 ( 6450 2fok_A) ( 410 1bja_A) 0.3670 0.3906 8.2833 ( 2 8 10) 0 0.3670 0.4450 10 7 ( 6450 2fok_A) ( 424 1bm9_A) 0.5896 0.8952 8.3705 ( 1 12 15) 0 0.5896 0.8952 10 6 ( 6450 2fok_A) ( 509 1c20_A) 0.1970 0.1987 9.3193 ( 2 4 6) 0 0.1970 0.1987 10 8 ( 6450 2fok_A) ( 576 1cf7_A) 0.5000 0.8333 2.3455 ( 0 9 10) 0 0.5000 0.8333 10 6 ( 6450 2fok_A) ( 904 1dp7_P) 0.3671 0.4455 4.4755 ( 1 5 6) 0 0.3671 0.4455 10 7 ( 6450 2fok_A) ( 997 1e17_A) 0.4887 0.7260 3.6679 ( 1 9 10) 0 0.4887 0.7260 10 6 ( 6450 2fok_A) ( 1461 1fc3_A) 0.2800 0.2910 8.6268 ( 1 3 6) 0 0.3999 0.4995 10 8 ( 6450 2fok_A) ( 1576 1fnn_A) 0.5907 0.8076 5.7142 ( 1 12 15) 0 0.5907 0.8076 10 7 ( 6450 2fok_A) ( 1595 1fp1_D) 0.5933 0.7304 3.8462 ( 1 13 15) 0 0.5933 0.7304 10 8 ( 6450 2fok_A) ( 1597 1fp2_A) 0.5999 0.7498 3.8550 ( 0 13 15) 0 0.5999 0.7498 10 8 ( 6450 2fok_A) ( 1664 1fzp_B) nil ( 6450 2fok_A) ( 1973 1gvj_A) 0.5933 0.5413 3.7615 ( 1 13 15) 0 0.5933 0.5413 10 11 ( 6450 2fok_A) ( 1999 1gxq_A) 0.5000 0.5555 2.7439 ( 0 9 10) 0 0.5000 0.5555 10 9 ( 6450 2fok_A) ( 2162 1hbx_G) 0.5933 0.5413 3.5742 ( 1 13 15) 0 0.5933 0.5413 10 11 ( 6450 2fok_A) ( 2224 1hkq_A) 0.5819 0.5819 4.5578 ( 1 10 15) 0 0.5819 0.5819 10 10 ( 6450 2fok_A) ( 2278 1hsj_A) 0.3668 0.4447 10.4410 ( 1 5 6) 0 0.3668 0.4447 10 7 ( 6450 2fok_A) ( 2410 1i5z_A) 0.4826 0.6860 2.7863 ( 1 8 10) 0 0.4826 0.6860 10 6 ( 6450 2fok_A) ( 2482 1ig6_A) 0.2413 0.2488 8.0332 ( 2 5 6) 0 0.2413 0.2488 10 6 ( 6450 2fok_A) ( 2544 1in4_A) 0.5933 0.8207 3.3338 ( 1 13 15) 0 0.5933 0.8207 10 7 ( 6450 2fok_A) ( 2703 1j1v_A) 0.3363 0.3879 6.5872 ( 1 4 6) 0 0.3363 0.3879 10 6 ( 6450 2fok_A) ( 2862 1jgs_A) 0.3995 0.4984 10.8067 ( 0 3 6) 0 0.3995 0.4984 10 8 ( 6450 2fok_A) ( 2871 1jhg_A) 0.1970 0.1996 11.3481 ( 2 4 6) 0 0.1970 0.1996 10 6 ( 6450 2fok_A) ( 3237 1ka8_A) 0.4887 0.5930 4.9870 ( 1 9 10) 0 0.5045 0.6249 10 8 ( 6450 2fok_A) ( 3296 1kgs_A) 0.5000 0.5555 3.3272 ( 0 7 10) 0 0.5000 0.5555 10 9 ( 6450 2fok_A) ( 3338 1kkx_A) 0.1654 0.1665 7.4703 ( 3 5 6) 0 0.1654 0.1665 10 6 ( 6450 2fok_A) ( 3438 1ku9_A) 0.4888 0.5932 2.0542 ( 1 9 10) 0 0.4888 0.5932 10 8 ( 6450 2fok_A) ( 3604 1ldj_A) 0.4997 0.8296 7.0290 ( 0 9 10) 0 0.4997 0.8296 10 6 ( 6450 2fok_A) ( 3639 1lj9_A) 0.5932 0.7301 4.9155 ( 1 13 15) 0 0.5932 0.7301 10 8 ( 6450 2fok_A) ( 3681 1lnw_A) 0.5932 0.7301 4.9112 ( 1 13 15) 0 0.5932 0.7301 10 8 ( 6450 2fok_A) ( 3746 1lva_A) 0.5000 0.8333 2.4676 ( 0 8 10) 0 0.5000 0.8333 10 6 ( 6450 2fok_A) ( 3748 1lva_A) 0.3316 0.3473 7.1965 ( 2 7 10) 0 0.3669 0.4660 10 6 ( 6450 2fok_A) ( 3934 1mij_A) 0.3993 0.6584 11.4230 ( 0 2 6) 0 0.3993 0.6584 10 6 ( 6450 2fok_A) ( 3960 1mkm_A) 0.5045 0.5819 4.0502 ( 2 12 15) 0 0.5045 0.6618 10 6 ( 6450 2fok_A) ( 4082 1mzb_A) 0.4000 0.4000 5.5652 ( 0 3 6) 0 0.4000 0.4000 10 10 ( 6450 2fok_A) ( 4537 1o7f_A) 0.5000 0.5555 3.5863 ( 0 10 10) 0 0.5000 0.5555 10 9 ( 6450 2fok_A) ( 4697 1okr_A) 0.5931 0.7297 5.6963 ( 1 13 15) 0 0.5931 0.7297 10 8 ( 6450 2fok_A) ( 4714 1omi_A) 0.5999 0.5999 4.0982 ( 0 12 15) 0 0.5999 0.5999 10 10 ( 6450 2fok_A) ( 4745 1opc ) 0.5000 0.5555 2.8527 ( 0 9 10) 0 0.5000 0.5555 10 9 ( 6450 2fok_A) ( 4840 1oyw_A) 0.3999 0.3999 7.5306 ( 0 4 6) 0 0.6474 0.6474 10 10 ( 6450 2fok_A) ( 4872 1p2f_A) 0.5000 0.6250 2.7220 ( 0 8 10) 0 0.5000 0.6250 10 8 ( 6450 2fok_A) ( 4894 1p4x_A) 0.4000 0.5000 4.1168 ( 0 6 6) 0 0.4998 0.6244 10 8 ( 6450 2fok_A) ( 4895 1p4x_A) 0.5999 0.8567 3.9280 ( 0 13 15) 0 0.5999 0.8567 10 7 ( 6450 2fok_A) ( 4986 1pdn_C) nil ( 6450 2fok_A) ( 5074 1pp7_U) 0.3671 0.3671 3.7372 ( 1 5 6) 0 0.4719 0.4719 10 10 ( 6450 2fok_A) ( 5110 1pue_E) 0.4999 0.7140 4.5763 ( 0 9 10) 0 0.4999 0.7140 10 7 ( 6450 2fok_A) ( 5180 1q1h_A) 0.4826 0.6316 2.7583 ( 1 8 10) 0 0.4826 0.6316 10 7 ( 6450 2fok_A) ( 5508 1qzz_A) 0.2800 0.2969 9.8192 ( 1 3 6) 0 0.2800 0.2969 10 6 ( 6450 2fok_A) ( 5612 1rep_C) 0.3670 0.3418 8.2659 ( 1 5 6) 0 0.4000 0.3636 10 11 ( 6450 2fok_A) ( 5613 1rep_C) 0.4999 0.6248 4.9926 ( 0 6 10) 0 0.5995 0.7486 10 8 ( 6450 2fok_A) ( 5750 1s29_A) 0.6366 0.7245 4.8565 ( 2 17 21) 0 0.6366 0.7245 10 8 ( 6450 2fok_A) ( 5764 1s3j_A) 0.5998 0.6663 5.1515 ( 0 13 15) 0 0.5998 0.6663 10 9 ( 6450 2fok_A) ( 5776 1s7a_A) 0.4824 0.6851 6.2698 ( 1 8 10) 0 0.4824 0.6851 10 6 ( 6450 2fok_A) ( 5829 1smt_A) 0.5234 0.6051 3.8183 ( 2 13 15) 0 0.5234 0.6051 10 7 ( 6450 2fok_A) ( 5959 1ub9_A) 0.5997 0.7492 5.4872 ( 0 12 15) 0 0.5997 0.7492 10 8 ( 6450 2fok_A) ( 5972 1ucr_A) 0.5000 0.8332 2.7451 ( 0 8 10) 0 0.5000 0.8332 10 6 ( 6450 2fok_A) ( 6025 1uhw_A) 0.2800 0.2969 8.8978 ( 1 3 6) 0 0.2801 0.2970 10 6 ( 6450 2fok_A) ( 6346 1xgs_A) 0.3363 0.3879 7.3118 ( 1 4 6) 0 0.3363 0.3879 10 6 ( 6450 2fok_A) ( 6450 2fok_A) 1.0000 1.0000 0.0000 ( 0 35 45) 0 1.0000 1.0000 10 10 ( 6450 2fok_A) ( 6451 2fok_A) 0.6000 0.5454 2.7227 ( 0 12 15) 0 0.6000 0.5454 10 11 ( 6450 2fok_A) ( 6476 2hts ) 0.4719 0.5944 4.3873 ( 1 7 10) 0 0.4719 0.5944 10 7 ( 6450 2fok_A) ( 6480 2irf_G) 0.4999 0.7138 5.0489 ( 0 9 10) 0 0.4999 0.7138 10 7 -------------------------------------------------------------------------------------------------------------------------