------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6476 2hts ) ( 288 1b4a_A) 0.5714 0.6665 4.1970 ( 0 5 6) 0 0.5714 0.6665 7 6 ( 6476 2hts ) ( 328 1b9m_A) 0.5712 0.4000 5.4438 ( 0 5 6) 0 0.5712 0.4000 7 10 ( 6476 2hts ) ( 410 1bja_A) 0.5714 0.5714 3.2292 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 6476 2hts ) ( 424 1bm9_A) 0.5713 0.6664 4.5880 ( 0 5 6) 0 0.5713 0.6664 7 6 ( 6476 2hts ) ( 509 1c20_A) 0.5712 0.4999 5.8160 ( 0 6 6) 0 0.5712 0.4999 7 8 ( 6476 2hts ) ( 576 1cf7_A) 0.5945 0.6327 2.8644 ( 1 7 10) 0 0.5945 0.6665 7 6 ( 6476 2hts ) ( 904 1dp7_P) 0.5943 0.5943 4.8752 ( 1 7 10) 0 0.5943 0.5943 7 7 ( 6476 2hts ) ( 997 1e17_A) 0.5713 0.6664 4.9997 ( 0 5 6) 0 0.5713 0.6664 7 6 ( 6476 2hts ) ( 1461 1fc3_A) 0.4918 0.4531 3.3575 ( 1 6 6) 0 0.4918 0.4531 7 8 ( 6476 2hts ) ( 1576 1fnn_A) 0.4455 0.4455 5.3735 ( 1 5 6) 0 0.4455 0.4455 7 7 ( 6476 2hts ) ( 1595 1fp1_D) 0.5712 0.4999 5.2742 ( 0 5 6) 0 0.5712 0.4999 7 8 ( 6476 2hts ) ( 1597 1fp2_A) 0.5710 0.4998 6.6242 ( 0 5 6) 0 0.5710 0.4998 7 8 ( 6476 2hts ) ( 1664 1fzp_B) 0.2945 0.2970 8.3586 ( 2 6 6) 0 0.2945 0.2970 7 6 ( 6476 2hts ) ( 1973 1gvj_A) 0.8087 0.5397 3.9124 ( 1 12 15) 0 0.8087 0.5397 7 11 ( 6476 2hts ) ( 1999 1gxq_A) 0.4455 0.3937 5.0342 ( 1 5 6) 0 0.4455 0.3937 7 9 ( 6476 2hts ) ( 2162 1hbx_G) 0.5686 0.4789 2.8399 ( 2 12 15) 0 0.5686 0.4789 7 11 ( 6476 2hts ) ( 2224 1hkq_A) 0.7142 0.5000 2.9115 ( 0 7 10) 0 0.7142 0.5000 7 10 ( 6476 2hts ) ( 2278 1hsj_A) 0.5945 0.5945 2.8443 ( 1 7 10) 0 0.5945 0.5945 7 7 ( 6476 2hts ) ( 2410 1i5z_A) 0.7142 0.8331 3.4903 ( 0 7 10) 0 0.7142 0.8331 7 6 ( 6476 2hts ) ( 2482 1ig6_A) 0.1993 0.1996 5.9641 ( 3 6 6) 0 0.1993 0.1996 7 6 ( 6476 2hts ) ( 2544 1in4_A) 0.5714 0.5714 3.2889 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 6476 2hts ) ( 2703 1j1v_A) 0.2945 0.2970 8.0304 ( 2 6 6) 0 0.2945 0.2970 7 6 ( 6476 2hts ) ( 2862 1jgs_A) 0.5714 0.5000 3.2294 ( 0 5 6) 0 0.5714 0.5000 7 8 ( 6476 2hts ) ( 2871 1jhg_A) 0.1992 0.1996 9.3939 ( 3 6 6) 0 0.1992 0.1996 7 6 ( 6476 2hts ) ( 3237 1ka8_A) 0.5713 0.4999 4.8676 ( 0 5 6) 0 0.5713 0.4999 7 8 ( 6476 2hts ) ( 3296 1kgs_A) 0.4454 0.3936 6.6084 ( 1 5 6) 0 0.4454 0.3936 7 9 ( 6476 2hts ) ( 3338 1kkx_A) 0.5710 0.6657 6.6991 ( 0 4 6) 0 0.5710 0.6657 7 6 ( 6476 2hts ) ( 3438 1ku9_A) 0.4450 0.4201 9.2915 ( 1 5 6) 0 0.4450 0.4201 7 8 ( 6476 2hts ) ( 3604 1ldj_A) 0.5931 0.6309 8.3403 ( 1 7 10) 0 0.5931 0.6309 7 6 ( 6476 2hts ) ( 3639 1lj9_A) 0.5714 0.5000 3.4129 ( 0 5 6) 0 0.5714 0.5000 7 8 ( 6476 2hts ) ( 3681 1lnw_A) 0.5714 0.5000 3.0080 ( 0 5 6) 0 0.5714 0.5000 7 8 ( 6476 2hts ) ( 3746 1lva_A) 0.4455 0.4667 5.9665 ( 1 5 6) 0 0.4455 0.4667 7 6 ( 6476 2hts ) ( 3748 1lva_A) 0.4455 0.4668 3.9246 ( 1 5 6) 0 0.4455 0.4668 7 6 ( 6476 2hts ) ( 3934 1mij_A) nil ( 6476 2hts ) ( 3960 1mkm_A) 0.5711 0.6660 6.0986 ( 0 5 6) 0 0.5711 0.6660 7 6 ( 6476 2hts ) ( 4082 1mzb_A) 0.1664 0.1654 5.9727 ( 3 5 6) 0 0.1992 0.1970 7 10 ( 6476 2hts ) ( 4537 1o7f_A) 0.4455 0.3937 4.3772 ( 1 5 6) 0 0.4455 0.3937 7 9 ( 6476 2hts ) ( 4697 1okr_A) 0.5648 0.4966 13.0992 ( 0 4 6) 0 0.5648 0.4966 7 8 ( 6476 2hts ) ( 4714 1omi_A) 0.5944 0.4719 3.4899 ( 1 7 10) 0 0.5944 0.4719 7 10 ( 6476 2hts ) ( 4745 1opc ) 0.4454 0.3936 6.4319 ( 1 5 6) 0 0.4454 0.3936 7 9 ( 6476 2hts ) ( 4840 1oyw_A) 0.5713 0.4000 4.7822 ( 0 4 6) 0 0.5713 0.4000 7 10 ( 6476 2hts ) ( 4872 1p2f_A) 0.4454 0.4204 6.2646 ( 1 5 6) 0 0.4454 0.4204 7 8 ( 6476 2hts ) ( 4894 1p4x_A) 0.5945 0.5527 3.0480 ( 1 7 10) 0 0.5945 0.5527 7 8 ( 6476 2hts ) ( 4895 1p4x_A) 0.4449 0.4449 9.8763 ( 1 5 6) 0 0.4449 0.4449 7 7 ( 6476 2hts ) ( 4986 1pdn_C) nil ( 6476 2hts ) ( 5074 1pp7_U) 0.8089 0.5910 3.0504 ( 1 12 15) 0 0.8089 0.5910 7 10 ( 6476 2hts ) ( 5110 1pue_E) 0.7142 0.7142 3.3240 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 6476 2hts ) ( 5180 1q1h_A) 0.1664 0.1664 6.7031 ( 3 5 6) 0 0.1664 0.1664 7 7 ( 6476 2hts ) ( 5508 1qzz_A) nil ( 6476 2hts ) ( 5612 1rep_C) 0.4455 0.3419 3.6327 ( 1 5 6) 0 0.5707 0.3636 7 11 ( 6476 2hts ) ( 5613 1rep_C) 0.5944 0.5526 4.0890 ( 1 7 10) 0 0.5944 0.5526 7 8 ( 6476 2hts ) ( 5750 1s29_A) 0.6567 0.5930 5.2056 ( 1 9 10) 0 0.6567 0.5930 7 8 ( 6476 2hts ) ( 5764 1s3j_A) 0.5945 0.5110 3.0908 ( 1 7 10) 0 0.5945 0.5110 7 9 ( 6476 2hts ) ( 5776 1s7a_A) 0.7139 0.8324 4.9651 ( 0 7 10) 0 0.7139 0.8324 7 6 ( 6476 2hts ) ( 5829 1smt_A) 0.5714 0.5714 3.1520 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 6476 2hts ) ( 5959 1ub9_A) 0.5945 0.5527 3.0875 ( 1 7 10) 0 0.5945 0.5527 7 8 ( 6476 2hts ) ( 5972 1ucr_A) 0.4455 0.4668 3.3423 ( 1 5 6) 0 0.4455 0.4668 7 6 ( 6476 2hts ) ( 6025 1uhw_A) 0.3790 0.3880 5.8841 ( 1 4 6) 0 0.3790 0.3880 7 6 ( 6476 2hts ) ( 6346 1xgs_A) nil ( 6476 2hts ) ( 6450 2fok_A) 0.5944 0.4719 4.3873 ( 1 7 10) 0 0.5944 0.4719 7 10 ( 6476 2hts ) ( 6451 2fok_A) 0.4900 0.3520 11.2688 ( 1 6 6) 0 0.5421 0.4233 7 11 ( 6476 2hts ) ( 6476 2hts ) 1.0000 1.0000 0.0000 ( 0 17 21) 0 1.0000 1.0000 7 7 ( 6476 2hts ) ( 6480 2irf_G) 0.7141 0.7141 4.0230 ( 0 7 10) 0 0.7141 0.7141 7 7 -------------------------------------------------------------------------------------------------------------------------