------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6480 2irf_G) ( 288 1b4a_A) 0.2977 0.2987 5.6252 ( 3 9 10) 0 0.2977 0.2987 7 6 ( 6480 2irf_G) ( 328 1b9m_A) 0.5686 0.3995 10.5493 ( 0 6 6) 0 0.5686 0.3995 7 10 ( 6480 2irf_G) ( 410 1bja_A) 0.5714 0.5714 3.6218 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 6480 2irf_G) ( 424 1bm9_A) 0.5709 0.6655 6.9041 ( 0 5 6) 0 0.5709 0.6655 7 6 ( 6480 2irf_G) ( 509 1c20_A) nil ( 6480 2irf_G) ( 576 1cf7_A) 0.8198 0.9258 5.2088 ( 1 13 15) 0 0.8198 0.9258 7 6 ( 6480 2irf_G) ( 904 1dp7_P) 0.4917 0.4917 5.9902 ( 1 6 6) 0 0.4917 0.4917 7 7 ( 6480 2irf_G) ( 997 1e17_A) 0.4738 0.4849 4.8054 ( 2 10 10) 0 0.4738 0.4849 7 6 ( 6480 2irf_G) ( 1461 1fc3_A) nil ( 6480 2irf_G) ( 1576 1fnn_A) 0.7138 0.7138 5.0554 ( 0 9 10) 0 0.7138 0.7138 7 7 ( 6480 2irf_G) ( 1595 1fp1_D) 0.5712 0.4999 5.3748 ( 0 6 6) 0 0.5712 0.4999 7 8 ( 6480 2irf_G) ( 1597 1fp2_A) 0.6739 0.6031 4.4811 ( 1 10 10) 0 0.6739 0.6031 7 8 ( 6480 2irf_G) ( 1664 1fzp_B) nil ( 6480 2irf_G) ( 1973 1gvj_A) 0.8207 0.5413 3.1378 ( 1 13 15) 0 0.8207 0.5413 7 11 ( 6480 2irf_G) ( 1999 1gxq_A) 0.7134 0.5553 5.9065 ( 0 10 10) 0 0.7134 0.5553 7 9 ( 6480 2irf_G) ( 2162 1hbx_G) 0.9989 0.6362 4.1320 ( 0 18 21) 0 0.9989 0.6362 7 11 ( 6480 2irf_G) ( 2224 1hkq_A) 0.8565 0.5999 4.4059 ( 0 10 15) 0 0.8565 0.5999 7 10 ( 6480 2irf_G) ( 2278 1hsj_A) nil ( 6480 2irf_G) ( 2410 1i5z_A) 0.6051 0.6237 4.1918 ( 2 13 15) 0 0.6051 0.6237 7 6 ( 6480 2irf_G) ( 2482 1ig6_A) nil ( 6480 2irf_G) ( 2544 1in4_A) 0.5714 0.5714 3.1449 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 6480 2irf_G) ( 2703 1j1v_A) nil ( 6480 2irf_G) ( 2862 1jgs_A) 0.5714 0.5000 3.9295 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 6480 2irf_G) ( 2871 1jhg_A) nil ( 6480 2irf_G) ( 3237 1ka8_A) 0.5712 0.4999 5.2954 ( 0 5 6) 0 0.6568 0.5930 7 8 ( 6480 2irf_G) ( 3296 1kgs_A) 0.7129 0.5552 6.6275 ( 0 8 10) 0 0.7129 0.5552 7 9 ( 6480 2irf_G) ( 3338 1kkx_A) nil ( 6480 2irf_G) ( 3438 1ku9_A) 0.4737 0.4588 5.5976 ( 2 10 10) 0 0.4737 0.4588 7 8 ( 6480 2irf_G) ( 3604 1ldj_A) 0.8091 0.9066 9.6142 ( 1 13 15) 0 0.8091 0.9066 7 6 ( 6480 2irf_G) ( 3639 1lj9_A) 0.5713 0.5000 4.3833 ( 0 6 6) 0 0.5713 0.5000 7 8 ( 6480 2irf_G) ( 3681 1lnw_A) 0.5714 0.5000 3.9692 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 6480 2irf_G) ( 3746 1lva_A) 0.2477 0.2488 7.9429 ( 2 5 6) 0 0.2477 0.2488 7 6 ( 6480 2irf_G) ( 3748 1lva_A) 0.7137 0.8321 5.2898 ( 0 9 10) 0 0.7137 0.8321 7 6 ( 6480 2irf_G) ( 3934 1mij_A) nil ( 6480 2irf_G) ( 3960 1mkm_A) 0.5713 0.6664 4.6744 ( 0 6 6) 0 0.5713 0.6664 7 6 ( 6480 2irf_G) ( 4082 1mzb_A) 0.3790 0.3363 7.3362 ( 1 4 6) 0 0.5713 0.4000 7 10 ( 6480 2irf_G) ( 4537 1o7f_A) 0.8562 0.6664 4.8196 ( 0 14 15) 0 0.8562 0.6664 7 9 ( 6480 2irf_G) ( 4697 1okr_A) 0.6736 0.6029 5.5635 ( 1 10 10) 0 0.6736 0.6029 7 8 ( 6480 2irf_G) ( 4714 1omi_A) 0.9736 0.6953 5.8538 ( 1 18 21) 0 0.9736 0.6953 7 10 ( 6480 2irf_G) ( 4745 1opc ) 0.6733 0.5428 6.3772 ( 1 10 10) 0 0.6733 0.5428 7 9 ( 6480 2irf_G) ( 4840 1oyw_A) 0.5714 0.4000 3.6832 ( 0 6 6) 0 0.5714 0.4204 7 10 ( 6480 2irf_G) ( 4872 1p2f_A) 0.2945 0.2909 9.6435 ( 1 3 6) 0 0.2945 0.2909 7 8 ( 6480 2irf_G) ( 4894 1p4x_A) 0.7141 0.6249 4.2452 ( 0 8 10) 0 0.7141 0.6249 7 8 ( 6480 2irf_G) ( 4895 1p4x_A) 0.5714 0.5714 4.0328 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 6480 2irf_G) ( 4986 1pdn_C) 0.4451 0.4202 8.7677 ( 1 5 6) 0 0.4451 0.4202 7 8 ( 6480 2irf_G) ( 5074 1pp7_U) 0.8567 0.5999 3.9282 ( 0 11 15) 0 0.8567 0.6366 7 10 ( 6480 2irf_G) ( 5110 1pue_E) 0.9995 0.9995 3.3347 ( 0 20 21) 0 0.9995 0.9995 7 7 ( 6480 2irf_G) ( 5180 1q1h_A) 0.5713 0.5713 4.5862 ( 0 5 6) 0 0.5713 0.5713 7 7 ( 6480 2irf_G) ( 5508 1qzz_A) nil ( 6480 2irf_G) ( 5612 1rep_C) 0.5709 0.3636 6.9776 ( 0 3 6) 0 0.5940 0.4788 7 11 ( 6480 2irf_G) ( 5613 1rep_C) 0.7686 0.6996 5.3964 ( 1 10 15) 0 0.7686 0.6996 7 8 ( 6480 2irf_G) ( 5750 1s29_A) 0.5713 0.4999 4.5369 ( 0 6 6) 0 0.5713 0.4999 7 8 ( 6480 2irf_G) ( 5764 1s3j_A) 0.8284 0.6581 5.0606 ( 1 14 15) 0 0.8284 0.6581 7 9 ( 6480 2irf_G) ( 5776 1s7a_A) 0.5705 0.6647 7.9632 ( 0 6 6) 0 0.5705 0.6647 7 6 ( 6480 2irf_G) ( 5829 1smt_A) 0.5714 0.5714 3.9790 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 6480 2irf_G) ( 5959 1ub9_A) 0.8075 0.7230 5.7492 ( 1 12 15) 0 0.8075 0.7230 7 8 ( 6480 2irf_G) ( 5972 1ucr_A) 0.7133 0.8313 6.0806 ( 0 9 10) 0 0.7133 0.8313 7 6 ( 6480 2irf_G) ( 6025 1uhw_A) 0.1664 0.1665 7.0273 ( 3 5 6) 1 0.1664 0.1665 7 6 ( 6480 2irf_G) ( 6346 1xgs_A) 0.2945 0.2969 9.0875 ( 2 6 6) 0 0.2945 0.2969 7 6 ( 6480 2irf_G) ( 6450 2fok_A) 0.7138 0.4999 5.0489 ( 0 9 10) 0 0.7138 0.4999 7 10 ( 6480 2irf_G) ( 6451 2fok_A) 0.4439 0.3414 12.6088 ( 1 5 6) 0 0.4446 0.3416 7 11 ( 6480 2irf_G) ( 6476 2hts ) 0.7141 0.7141 4.0230 ( 0 7 10) 0 0.7141 0.7141 7 7 ( 6480 2irf_G) ( 6480 2irf_G) 1.0000 1.0000 0.0000 ( 0 20 21) 0 1.0000 1.0000 7 7 -------------------------------------------------------------------------------------------------------------------------