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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4837 1oyj_A)  (  225 1aw9  )     0.7136   0.6247   5.5165 (   0    6   10)   0     0.7136   0.6247    7   8
( 4837 1oyj_A)  ( 1124 1eem_A)     0.8562   0.7495   4.8706 (   0   11   15)   0     0.8562   0.7495    7   8
( 4837 1oyj_A)  ( 1371 1f2e_A)     0.7140   0.7140   4.2821 (   0    6   10)   0     0.7140   0.7140    7   7
( 4837 1oyj_A)  ( 1754 1g7o_A)     0.5713   0.6665   4.5451 (   0    4    6)   0     0.5713   0.6665    7   6
( 4837 1oyj_A)  ( 1868 1glq_A)     0.7139   0.7139   4.8155 (   0    6   10)   0     0.7139   0.7139    7   7
( 4837 1oyj_A)  ( 1883 1gnw_A)     0.7136   0.6247   5.5526 (   0    6   10)   0     0.7316   0.6756    7   8
( 4837 1oyj_A)  ( 1987 1gwc_A)     0.9546   0.8506   4.5975 (   1   15   21)   0     0.9546   0.8506    7   8
( 4837 1oyj_A)  ( 2662 1iyh_A)     0.7141   0.8329   4.0146 (   0    6   10)   0     0.7141   0.8329    7   6
( 4837 1oyj_A)  ( 2962 1jlv_A)     0.7135   0.8317   5.7321 (   0    6   10)   0     0.7135   0.8317    7   6
( 4837 1oyj_A)  ( 3110 1k0d_A)     0.5938   0.6319   6.9230 (   1    7   10)   0     0.5938   0.6596    7   6
( 4837 1oyj_A)  ( 3116 1k0m_A)     0.8553   0.7490   5.7034 (   0   11   15)   0     0.9144   0.8271    7   8
( 4837 1oyj_A)  ( 3169 1k3y_A)     0.8552   0.8552   5.7564 (   0   11   15)   0     0.8552   0.8552    7   7
( 4837 1oyj_A)  ( 3642 1ljr_A)     0.5710   0.4998   6.4226 (   0    4    6)   0     0.5710   0.5142    7   8
( 4837 1oyj_A)  ( 3774 1m0u_A)     0.7140   0.8328   4.2794 (   0    5   10)   0     0.7360   0.8328    7   6
( 4837 1oyj_A)  ( 4114 1n2a_A)     0.7139   0.8326   4.7163 (   0    6   10)   0     0.7139   0.8326    7   6
( 4837 1oyj_A)  ( 4261 1nhy_A)     0.5713   0.4999   4.5834 (   0    4    6)   0     0.5713   0.4999    7   8
( 4837 1oyj_A)  ( 4613 1oe8_A)     0.7141   0.8329   4.1155 (   0    5   10)   0     0.7141   0.8329    7   6
( 4837 1oyj_A)  ( 4699 1okt_A)     0.7141   0.8330   3.8687 (   0    6   10)   0     0.7141   0.8330    7   6
( 4837 1oyj_A)  ( 4837 1oyj_A)     1.0000   1.0000   0.0000 (   0   17   21)   0     1.0000   1.0000    7   7
( 4837 1oyj_A)  ( 5558 1r5a_A)     0.7124   0.8294   7.1447 (   0    6   10)   0     0.7124   0.8294    7   6
( 4837 1oyj_A)  ( 6157 1v2a_A)     0.7127   0.8298   6.9361 (   0    6   10)   0     0.7127   0.8298    7   6

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