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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2929 1jjc_B)  ( 1301 1exj_A)     0.4668   0.4455   3.9727 (   1    5    6)   0     0.5277   0.4910    6   7
( 2929 1jjc_B)  ( 2777 1j9i_A)     0.6859   0.6859   3.9364 (   1    8   10)   0     0.6859   0.6859    6   6
( 2929 1jjc_B)  ( 2810 1jbg_A)     0.2488   0.2488   4.2092 (   2    5    6)   0     0.5278   0.5278    6   6
( 2929 1jjc_B)  ( 2926 1jjc_B)     0.4925   0.4925   3.1524 (   2   10   15)   0     0.4925   0.4925    6   6
( 2929 1jjc_B)  ( 2929 1jjc_B)     1.0000   1.0000   0.0000 (   0   12   15)   0     1.0000   1.0000    6   6
( 2929 1jjc_B)  ( 3573 1l8r_A)     0.6860   0.5774   2.9176 (   1    8   10)   0     0.6860   0.5774    6   8
( 2929 1jjc_B)  ( 5164 1q06_A)   nil

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