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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3866 1m6y_A)  (  834 1dgs_A)     0.7540   0.3825   6.0154 (   1   10   10)   0     0.7540   0.3825    6  13
( 3866 1m6y_A)  ( 1552 1flo_A)     0.6635   0.4440   8.9312 (   0    4    6)   0     0.6635   0.4440    6   9
( 3866 1m6y_A)  ( 1887 1go3_F)     0.6666   0.5714   3.2139 (   0    5    6)   0     0.6666   0.5714    6   7
( 3866 1m6y_A)  ( 3866 1m6y_A)     1.0000   1.0000   0.0000 (   0   14   15)   0     1.0000   1.0000    6   6
( 3866 1m6y_A)  ( 5722 1rxw_A)     0.6663   0.6663   5.0375 (   0    6    6)   0     0.6663   0.6663    6   6
( 3866 1m6y_A)  ( 5905 1tfr  )     0.2969   0.2909  10.7564 (   2    6    6)   0     0.6665   0.5000    6   8
( 3866 1m6y_A)  ( 6349 1xo1_A)     0.6664   0.5713   4.5761 (   0    5    6)   0     0.6664   0.5713    6   7

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