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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1406 1f5q_B)  (  461 1bu2_A)     0.7141   0.8330   3.9357 (   0    9   10)   0     0.7141   0.8330    7   6
( 1406 1f5q_B)  (  462 1bu2_A)     0.8294   0.9437   2.5463 (   1   14   15)   0     0.8294   0.9437    7   6
( 1406 1f5q_B)  ( 1405 1f5q_B)     0.7142   0.7142   3.6594 (   0    8   10)   0     0.7142   0.7142    7   7
( 1406 1f5q_B)  ( 1406 1f5q_B)     1.0000   1.0000   0.0000 (   0   18   21)   0     1.0000   1.0000    7   7
( 1406 1f5q_B)  ( 1710 1g3n_C)     0.7141   0.7141   3.8058 (   0    8   10)   0     0.7141   0.7141    7   7
( 1406 1f5q_B)  ( 1963 1gux_A)     0.7140   0.5000   4.4544 (   0    9   10)   0     0.7140   0.5000    7  10
( 1406 1f5q_B)  ( 1964 1gux_B)     0.7133   0.6245   6.0551 (   0    9   10)   0     0.7133   0.6245    7   8
( 1406 1f5q_B)  ( 2077 1h4l_D)     0.5714   0.5714   3.4764 (   0    6    6)   0     0.5714   0.5714    7   7
( 1406 1f5q_B)  ( 2949 1jkw  )     0.7135   0.8317   5.7147 (   0    8   10)   0     0.7135   0.8317    7   6
( 1406 1f5q_B)  ( 2950 1jkw  )     0.8207   0.8207   2.8563 (   1   13   15)   0     0.8207   0.8207    7   7
( 1406 1f5q_B)  ( 6267 1vin  )     0.7142   0.7142   3.7112 (   0    9   10)   0     0.7142   0.7142    7   7
( 1406 1f5q_B)  ( 6268 1vin  )     0.8088   0.8088   3.3447 (   1   12   15)   0     0.8088   0.8088    7   7

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